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Showing :
biomart
•
reset
1
vote
2
replies
644
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
4 weeks ago
Svitlana
▴ 10
0
votes
0
replies
181
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
6 weeks ago
Reese
• 0
0
votes
2
replies
277
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
9 weeks ago
landenshanie
▴ 40
0
votes
0
replies
136
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
9 weeks ago
Abiologist
• 0
1
vote
0
replies
169
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
10 weeks ago
Aleena
▴ 30
1
vote
3
replies
325
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
bas_work
▴ 30
2
votes
2
replies
390
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
sansan
• 0
0
votes
1
reply
251
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
Reeya
• 0
0
votes
1
reply
478
views
error in mapIds function
mapIds
biomaRt
updated 5 months ago by
Marcel Ramos
700 • written 5 months ago by
Regina
• 0
0
votes
2
replies
655
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
5 months ago
eefernan5
• 0
3
votes
3
replies
10k
views
How to find rsID with biomaRt in R
biomaRt
updated 5 months ago by
James W. MacDonald
66k • written 3.4 years ago by
Federica
▴ 10
1
vote
1
reply
335
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 5 months ago by
Robin
• 0 • written 5 months ago by
Pez
▴ 10
0
votes
1
reply
305
views
biomaRt issue
biomaRt
updated 5 months ago by
Mike Smith
★ 6.5k • written 5 months ago by
Fariz
• 0
1
vote
5
replies
725
views
BiomaRt download data error
biomaRt
updated 5 months ago by
Mike Smith
★ 6.5k • written 5 months ago by
Max Bone
• 0
6
votes
9
replies
1.2k
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 5 months ago by
alexander3
• 0 • written 5 months ago by
Amparo
• 0
1
vote
1
reply
725
views
Error with biomaRt
biomaRt
updated 6 months ago by
Mike Smith
★ 6.5k • written 6 months ago by
goldenboy
• 0
4
votes
2
replies
547
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 6 months ago by
Guido Hooiveld
★ 4.0k • written 6 months ago by
sansan
• 0
2
votes
2
replies
818
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
6 months ago
bd2000
▴ 30
1
vote
0
replies
324
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
6 months ago
Benjamin
▴ 30
0
votes
2
replies
545
views
Problem with loading ensembl version 105.
biomaRt
7 months ago
RC
• 0
0
votes
1
reply
944
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 7 months ago by
James W. MacDonald
66k • written 7 months ago by
ai.yaku
• 0
0
votes
3
replies
616
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 7 months ago by
Robert Castelo
★ 3.3k • written 7 months ago by
bd2000
▴ 30
4
votes
12
replies
1.2k
views
Ensembl down???
biomaRt
8 months ago • updated 7 months ago
bas_work
▴ 30
3
votes
2
replies
565
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
8 months ago
henrydionne
▴ 10
1
vote
2
replies
980
views
How to find stop codons for a list of genes
stopcodon
biomaRt
8 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
1.0k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
8 months ago • updated 4 months ago
ScafioRuo
• 0
12
votes
10
replies
9.3k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 4 months ago by
juo5
• 0 • written 9 months ago by
Abhishek
▴ 20
0
votes
3
replies
582
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 9 months ago by
Gordon Smyth
51k • written 9 months ago by
Marilyn
• 0
1
vote
4
replies
808
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
10 months ago
andrew.b.kleist
▴ 10
7
votes
6
replies
4.9k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 9 months ago by
Marcel Ramos
700 • written 23 months ago by
Recep
▴ 20
0
votes
2
replies
479
views
Biomart - upstream region of 'coding'
biomaRt
updated 10 months ago by
Mike Smith
★ 6.5k • written 10 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
469
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
11 months ago
ali.oghabian
• 0
1
vote
5
replies
719
views
Errors with makeTxDbFromBiomart
biomaRt
updated 11 months ago by
James W. MacDonald
66k • written 11 months ago by
Jerina
▴ 10
3
votes
2
replies
1.3k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 11 months ago by
Guido Hooiveld
★ 4.0k • written 11 months ago by
Milan
▴ 10
0
votes
3
replies
963
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 11 months ago by
Hervé Pagès
16k • written 12 months ago by
anavmar1
• 0
0
votes
3
replies
1.7k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 15 months ago by
nhaus
▴ 50
0
votes
3
replies
1.1k
views
Problem installing biomaRt on mac
biomaRt
mac
updated 11 months ago by
15753563659
▴ 60 • written 20 months ago by
alfonsosaera
• 0
2
votes
2
replies
2.8k
views
biomaRt finding transcript lenghts
biomaRt
updated 4 weeks ago by
niko.fleischer
• 0 • written 23 months ago by
Recep
▴ 20
7
votes
5
replies
7.6k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 9 months ago by
Ke
• 0 • written 2.2 years ago by
kieran.short
▴ 40
22
votes
15
replies
8.1k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 8 months ago by
Marie
▴ 10 • written 2.3 years ago by
Dina
▴ 50
1
vote
7
replies
5.0k
views
Problems Installing biomaRt
biomaRt
updated 8 months ago by
James W. MacDonald
66k • written 2.3 years ago by
ksci
▴ 20
0
votes
1
reply
1.1k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.7 years ago by
Lillian
• 0
1
vote
4
replies
1.3k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 4 months ago by
James W. MacDonald
66k • written 4.3 years ago by
RJW63
• 0
0
votes
2
replies
754
views
biomart not ound some prevous release
biomart
rnaseq
written 5.4 years ago by
jarod_v6@libero.it
▴ 40
44 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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