Showing : biomart • reset
22
votes
15
replies
7.6k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 6 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
10
votes
10
replies
7.4k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 8 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
10
replies
849
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
6 months ago • updated 11 weeks ago ScafioRuo • 0
6
votes
9
replies
862
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
7
replies
4.6k
views
Problems Installing biomaRt
biomaRt
updated 6 months ago by 65k • written 2.1 years ago by ▴ 20
7
votes
6
replies
4.3k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 700 • written 21 months ago by ▴ 20
1
vote
5
replies
625
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 65k • written 9 months ago by ▴ 10
7
votes
5
replies
7.1k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.0 years ago by ▴ 40
1
vote
5
replies
485
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
5
votes
4
replies
9.8k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 65k • written 3.8 years ago by • 0
1
vote
4
replies
1.2k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 8 weeks ago by 65k • written 4.1 years ago by • 0
4
votes
4
replies
1.8k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
2
votes
4
replies
978
views
Use with_go along with other filters in getBM function
Annotation biomaRt
12 months ago • updated 11 months ago RuBBiT0 ▴ 10
1
vote
4
replies
698
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
0
votes
3
replies
809
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 10 months ago by • 0
3
votes
3
replies
9.5k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 65k • written 3.2 years ago by ▴ 10
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 9 months ago by ▴ 50 • written 18 months ago by • 0
0
votes
3
replies
177
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 4 weeks ago by 65k • written 4 weeks ago by ▴ 30
0
votes
3
replies
431
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 30
0
votes
3
replies
496
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
2
replies
385
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
3
votes
2
replies
453
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
2
votes
2
replies
686
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago bd2000 ▴ 30
1
vote
2
replies
824
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
2
replies
419
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
4
votes
2
replies
395
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 4.0k • written 9 months ago by ▴ 10
0
votes
2
replies
489
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago eefernan5 • 0
1
vote
2
replies
639
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
2
replies
710
views
biomart not ound some prevous release
biomart rnaseq
written 5.3 years ago by ▴ 40
1
vote
2
replies
704
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
2
votes
2
replies
220
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
1
vote
1
reply
463
views
Error with biomaRt
biomaRt
updated 4 months ago by ★ 6.5k • written 4 months ago by • 0
0
votes
1
reply
167
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
1
reply
638
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 10 months ago by 65k • written 10 months ago by • 0
0
votes
1
reply
236
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
0
votes
1
reply
328
views
error in mapIds function
mapIds biomaRt
updated 11 weeks ago by 700 • written 12 weeks ago by • 0
1
vote
1
reply
248
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
0
votes
1
reply
988
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
0
votes
1
reply
848
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 12 months ago by • 0
0
votes
1
reply
763
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
1.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
0
votes
0
replies
397
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago ali.oghabian • 0
0
votes
0
replies
36
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
1 day ago • updated 9 hours ago Abiologist • 0
1
vote
0
replies
239
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
1
vote
0
replies
62
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
5 days ago Aleena ▴ 30
48 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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