Bioconductor Blast

Showing : blast • reset

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361

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blast

14 months ago kvigil • 0

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1.3k

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blast blastsequences

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by aush ▴ 40

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927

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R blast blastsequences protein

6.3 years ago andres.susrud • 0

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2.2k

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annotate blastSequences BLAST https

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by ariel.hecht • 0

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8.3k

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blast

updated 7.7 years ago by Malcolm Cook ★ 1.6k • written 7.7 years ago by biomiha ▴ 20

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848

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Biostrings blast variantannotation

7.7 years ago li lilingdu ▴ 450

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1.5k

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primer blast

updated 8.0 years ago by Hervé Pagès 16k • written 8.0 years ago by Vinicius Henrique da Silva ▴ 40

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5.5k

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blast R

8.2 years ago maahpishanu • 0

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4.4k

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annotation blast biostrings

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Mathilde • 0

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1.8k

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blast annotate biostrings export fasta

9.5 years ago b.stielow • 0

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4.8k

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GO BLAST annotation

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by Jon Bråte ▴ 250

11 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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