Showing : blast • reset
4
votes
13
replies
4.4k
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How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
3
votes
8
replies
8.3k
views
Which package to run blast
blast
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by ▴ 20
0
votes
5
replies
5.5k
views
Blastp - through R
blast R
8.2 years ago maahpishanu • 0
4
votes
3
replies
4.8k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 9.5 years ago by ★ 7.2k • written 9.6 years ago by ▴ 250
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 7.6 years ago by 25k • written 7.6 years ago by • 0
1
vote
2
replies
1.3k
views
blastn for selected database and/or organism
blast blastsequences
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 40
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
0
votes
1
reply
1.5k
views
Primer-blast with bioconductor packages
primer blast
updated 7.9 years ago by 16k • written 8.0 years ago by ▴ 40
0
votes
0
replies
352
views
Visualize blastx output in R
blast
14 months ago kvigil • 0
0
votes
0
replies
845
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings blast variantannotation
7.7 years ago li lilingdu ▴ 450
0
votes
0
replies
922
views
batch blast matrix of protein sequences from R
R blast blastsequences protein
6.3 years ago andres.susrud • 0
11 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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