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cager
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
4 weeks ago
Haggu
10
6
votes
8
replies
1.7k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 21 months ago by
Charles Plessy
▴ 180 • written 2.4 years ago by
Meng
▴ 30
0
votes
3
replies
1.3k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 3.5 years ago by
Charles Plessy
▴ 180 • written 3.6 years ago by
Sergio
• 0
1
vote
2
replies
1.1k
views
CAGEexp vs CAGErseq
CAGEr
updated 3.5 years ago by
Charles Plessy
▴ 180 • written 4.0 years ago by
MatteoP
▴ 10
0
votes
0
replies
621
views
CAGEr consensusClustersDESeq2()
CAGEr
4.0 years ago
MatteoP
▴ 10
0
votes
5
replies
1.4k
views
CAGEr promoter width graph
CAGEr
updated 3.6 years ago by
Charles
• 0 • written 4.6 years ago by
leehami7407
• 0
1
vote
4
replies
1.1k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
4.9 years ago
mirkocelii
▴ 40
1
vote
6
replies
1.6k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 5.0 years ago by
Charles Plessy
▴ 180 • written 5.8 years ago by
sarac
▴ 20
1
vote
3
replies
1.2k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
5.0 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.6k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
5.0 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.7k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 5.9 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.2k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
6.4 years ago
bharata1803
▴ 60
0
votes
1
reply
1.1k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
6.5 years ago
Zhong JW
• 0
1
vote
2
replies
1.6k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
6.5 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
3.0k
views
bam2CTSS function error from CAGEr package
cager
6.5 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.5k
views
no import.bam function in CAGEr version 1.22.3
cager
6.5 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.1k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
6.9 years ago
Jingwen
▴ 10
0
votes
1
reply
1.3k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 7.0 years ago by
Charles Plessy
▴ 180 • written 10.7 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.3k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 7.5 years ago by
Charles Plessy
▴ 180 • written 7.5 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.5k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 7.7 years ago by
Charles Plessy
▴ 180 • written 7.8 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.5k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 3.6 years ago by
jingxian.18
• 0 • written 9.2 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.3k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
calibula2000
• 0
22 results • Page
1 of 1
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Replies
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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