Bioconductor Cager

Showing : cager • reset

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1.2k

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CAGEr

updated 9 months ago by Charles Plessy ▴ 180 • written 16 months ago by Meng ▴ 30

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952

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 2.6 years ago by Sergio • 0

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822

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 3.0 years ago by MatteoP ▴ 10

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466

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CAGEr

3.0 years ago MatteoP ▴ 10

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1.1k

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CAGEr

updated 2.6 years ago by Charles • 0 • written 3.6 years ago by leehami7407 • 0

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816

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CAGEr quantilePositions

3.9 years ago mirkocelii ▴ 40

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1.2k

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cager cage ctss

updated 4.0 years ago by Charles Plessy ▴ 180 • written 4.8 years ago by sarac ▴ 20

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837

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CAGEr CAGEset quantile CAGEexp

4.0 years ago mirkocelii ▴ 40

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1.1k

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CAGEr IRanges aggregateTagClusters

4.0 years ago mirkocelii ▴ 40

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1.3k

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CTSS clustering tag per million tag counts CAGEr

updated 2.4 years ago by Charles Plessy ▴ 180 • written 4.9 years ago by regcastillo1990 • 0

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900

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TSS promoter cage cager

5.4 years ago bharata1803 ▴ 60

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897

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cager CAGEr

5.5 years ago Zhong JW • 0

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1.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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2.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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1.2k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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868

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cager

5.9 years ago Jingwen ▴ 10

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1.1k

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BRAIN CAGEr BRAIN CAGEr

updated 6.0 years ago by Charles Plessy ▴ 180 • written 9.7 years ago by Tobias Hohenauer ▴ 10

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989

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CAGEr

updated 6.5 years ago by Charles Plessy ▴ 180 • written 6.5 years ago by bo_yan ▴ 10

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2.0k

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CAGEr BAM software error R biostrings

updated 6.7 years ago by Charles Plessy ▴ 180 • written 6.8 years ago by orzechowska.mag ▴ 10

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2.1k

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CAGEr cage

updated 2.6 years ago by jingxian.18 • 0 • written 8.2 years ago by Vivek.b ▴ 100

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1.1k

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CAGEr

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by calibula2000 • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0