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cager
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
8 months ago
Haggu
10
6
votes
8
replies
2.0k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 2.4 years ago by
Charles Plessy
▴ 180 • written 3.1 years ago by
Meng
▴ 30
0
votes
3
replies
1.5k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 4.1 years ago by
Charles Plessy
▴ 180 • written 4.3 years ago by
Sergio
• 0
1
vote
2
replies
1.3k
views
CAGEexp vs CAGErseq
CAGEr
updated 4.1 years ago by
Charles Plessy
▴ 180 • written 4.7 years ago by
MatteoP
▴ 10
0
votes
0
replies
742
views
CAGEr consensusClustersDESeq2()
CAGEr
4.7 years ago
MatteoP
▴ 10
0
votes
5
replies
1.6k
views
CAGEr promoter width graph
CAGEr
updated 4.3 years ago by
Charles
• 0 • written 5.3 years ago by
leehami7407
• 0
1
vote
4
replies
1.3k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
5.6 years ago
mirkocelii
▴ 40
1
vote
6
replies
1.9k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 5.6 years ago by
Charles Plessy
▴ 180 • written 6.4 years ago by
sarac
▴ 20
1
vote
3
replies
1.3k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
5.6 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.8k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
5.6 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.9k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 4.1 years ago by
Charles Plessy
▴ 180 • written 6.6 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.4k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.1 years ago
bharata1803
▴ 60
0
votes
1
reply
1.2k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
7.1 years ago
Zhong JW
• 0
1
vote
2
replies
1.7k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
7.2 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
3.4k
views
bam2CTSS function error from CAGEr package
cager
7.2 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.8k
views
no import.bam function in CAGEr version 1.22.3
cager
7.2 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.2k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
7.6 years ago
Jingwen
▴ 10
0
votes
1
reply
1.5k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 7.6 years ago by
Charles Plessy
▴ 180 • written 11.4 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.4k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 8.2 years ago by
Charles Plessy
▴ 180 • written 8.2 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.8k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 8.4 years ago by
Charles Plessy
▴ 180 • written 8.4 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.7k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 4.3 years ago by
jingxian.18
• 0 • written 9.9 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.4k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
calibula2000
• 0
22 results • Page
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Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
aqeel
• 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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