Showing : classification • reset
0
votes
0
replies
761
views
Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.8 years ago • updated 3.5 years ago whduke • 0
3
votes
2
replies
1.1k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.5 years ago by 41k • written 5.5 years ago by • 0
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
5.7 years ago Jenny.chien • 0
0
votes
0
replies
785
views
NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.9 years ago Seymoo • 0
0
votes
1
reply
1.1k
views
Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
0
votes
0
replies
980
views
Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
1.0k
views
Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma microarray plotRLDF classification
7.9 years ago svlachavas ▴ 830
0
votes
0
replies
724
views
Package for classifying two classes of sequences using hidden markov models?
hmm classification
8.1 years ago vinod.acear ▴ 50
1
vote
1
reply
2.2k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
1
vote
2
replies
1.5k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 830
0
votes
0
replies
1.4k
views
Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
9.0 years ago svlachavas ▴ 830
0
votes
2
replies
1.1k
views
Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
0
votes
3
replies
1.5k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 9.8 years ago by 21k • written 9.8 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
10.0 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.5k
views
MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ★ 1.5k
0
votes
1
reply
1.5k
views
Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
0
replies
1.1k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
10.2 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
0
votes
0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
0
votes
5
replies
3.1k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.1 years ago by 41k • written 11.1 years ago by ★ 13k
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.1 years ago Matthew Thornton ▴ 350
0
votes
3
replies
3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 300
0
votes
3
replies
2.8k
views
PAMR- Package: Workflow and/or other methods
Classification Classification
updated 11.5 years ago by 21k • written 11.5 years ago by ▴ 70
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
votes
0
replies
951
views
Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
11.8 years ago Guest User ★ 13k
0
votes
0
replies
1.4k
views
Overlapping ROC plots
Classification ROC graph Classification ROC graph
11.9 years ago Yadav Sapkota ▴ 130
0
votes
0
replies
740
views
Question about MCRestimate
Classification Classification
11.9 years ago ZHENG FU ▴ 10
0
votes
5
replies
4.5k
views
probability of a point membership to a certain cluster
Classification Classification
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 60
0
votes
0
replies
2.4k
views
'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
13.2 years ago Santosh Patnaik ▴ 30
0
votes
4
replies
1.6k
views
RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 370
0
votes
0
replies
881
views
Fwd: question regarding to MLInterface
Network Classification Network Classification
13.5 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
17k
views
1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
0
votes
0
replies
1.5k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
14.2 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
988
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
1
reply
1.5k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 14.3 years ago by ★ 13k • written 14.3 years ago by 21k
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
0
replies
1.2k
views
compare function in CMA package
Classification CMA Classification CMA
14.3 years ago Javier Pérez Florido ▴ 840
0
votes
0
replies
1.2k
views
Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
14.4 years ago qinghua xu ▴ 110
0
votes
0
replies
1.0k
views
回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
14.4 years ago qinghua xu ▴ 110
0
votes
0
replies
720
views
转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
14.4 years ago Martin Morgan 25k
0
votes
1
reply
1.2k
views
Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 14.4 years ago by ▴ 110 • written 14.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ▴ 190
0
votes
0
replies
1.3k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
14.5 years ago Reek, J. ▴ 10
0
votes
2
replies
1.1k
views
OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 14.7 years ago by ★ 1.3k • written 14.7 years ago by ▴ 110
0
votes
0
replies
1.5k
views
CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.2 years ago Renaud Gaujoux ▴ 170
0
votes
0
replies
1.5k
views
Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.5 years ago Renaud Gaujoux ▴ 170
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
1.0k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.6 years ago Scott Ochsner ▴ 300
0
votes
2
replies
1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.6 years ago by ▴ 750 • written 15.6 years ago by ▴ 300
0
votes
0
replies
1.1k
views
Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
50 results • Page 1 of 1
Recent ...
Replies
Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Awards • All
Popular Question to junhui.li11 • 0
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
Centurion to Chris • 0
Commentator to Leonard Goldstein ▴ 200
Locations • All
The city by the bay, 47 minutes ago
Canada, 51 minutes ago
USA, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Canada, 2 hours ago
Traffic: 382 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6