Showing : clusterprofiler • reset
0
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4
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2.8k
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How to use clusterProfiler to do GO enrichment analysis with unsupported organisms
clusterprofiler go Gff2GeneTable buildgo unsupported organisms
8.9 years ago Didi ▴ 10
2
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4
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3.2k
views
Problem with BuildGOmap() in clusterProfiler
clusterprofiler
8.9 years ago Marcus • 0
1
vote
10
replies
5.3k
views
Issue of clusterprofiler package
clusterprofiler
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by • 0
1
vote
5
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3.7k
views
clusterProfiler - get symbol from GSEA results
clusterProfiler
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 90
3
votes
7
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5.4k
views
clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
9.0 years ago Jane Merlevede ▴ 90
1
vote
2
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3.7k
views
clusterProfiler - difference in the number of genes from input and enrichGO results
clusterProfiler
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 90
0
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2
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4.6k
views
clusterProfiler - qvalue adjustment method in enricher()
clusterProfiler
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 90
0
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2
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3.1k
views
clusterProfiler - interpretation of plotGOgraph
clusterprofiler topgo
9.0 years ago Jane Merlevede ▴ 90
0
votes
3
replies
9.2k
views
clusterProfiler - how does showCategory work in dotplot from compareClusterResult class?
clusterprofiler
9.0 years ago Jane Merlevede ▴ 90
1
vote
2
replies
6.3k
views
clusterProfiler : How works the q-value filtering ? What is a good cutoff ? Is this like an FDR ?
clusterprofiler qvalue
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 60
0
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5
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3.3k
views
Questions on using clusterProfiler
clustering clusterprofiler
9.1 years ago zhangducsu • 0
2
votes
6
replies
4.4k
views
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler DOSE GSEA_internal USER_DATA leading edge Analysis
9.1 years ago Riba Michela ▴ 90
1
vote
2
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2.4k
views
can KEGG figures produced by pathview be used in publication, or that they are copyrighted ?
pathview clusterprofiler
9.1 years ago assaf www ▴ 140
0
votes
1
reply
1.2k
views
how to classify geneID in the compareCluster
clusterprofiler
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by ▴ 50
0
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1
reply
1.4k
views
input data format for enricher() function
clusterProfiler
9.1 years ago joseph ▴ 50
0
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1
reply
1.9k
views
Add title to enrichMap and cnetplot plots
clusterprofiler
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 860
0
votes
2
replies
2.1k
views
Returning less assigned genes than expected
clusterprofiler
9.2 years ago David ▴ 860
0
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1
reply
3.3k
views
ClusterProfiler can't load gmt file
GSEA clusterprofiler gmt
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by • 0
0
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1
reply
1.2k
views
plot cannot presented for the clusterprofiler results
clusterprofiler
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 50
1
vote
2
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1.8k
views
clusterProfiler: enrichDavid produces NA values
clusterProfiler
9.2 years ago n.kreim ▴ 20
2
votes
2
replies
5.1k
views
Bgratio column in clusterProfiler enrichGO results
clusterprofiler
updated 2.3 years ago by • 0 • written 9.3 years ago by ▴ 10
0
votes
1
reply
3.7k
views
Combining compareCluster with enricher in clusterProfiler
clusterprofiler
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by ▴ 10
6
votes
2
replies
5.8k
views
help with clusterProfiler enricher function
clusterprofiler
9.5 years ago naholi.alejandri ▴ 50
1
vote
4
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3.8k
views
Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
9.5 years ago José Luis Lavín ▴ 10
4
votes
10
replies
8.4k
views
Help with enrichKEGG function in clusterProfiler
clusterprofiler
updated 3.3 years ago by ▴ 40 • written 9.7 years ago by ▴ 10
0
votes
0
replies
3.4k
views
Modifying the legend in cnetplot function
clusterProfiler DOSE
9.9 years ago Vinicius Henrique da Silva ▴ 40
0
votes
2
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2.6k
views
library(clusterProfiler) cnetplot(fixed = F): why can´t I get the color legend?
clusterprofiler tkplot
10.0 years ago cristina della beffa ▴ 30
3
votes
5
replies
3.1k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 840
1
vote
1
reply
1.9k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 10.2 years ago by ★ 8.2k • written 10.2 years ago by ★ 1.2k
0
votes
2
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1.5k
views
GO annotation missing in org.EcSakai.eg.db?
org.EcSakai.eg.db Annotation go clusterProfiler
updated 10.3 years ago by 68k • written 10.3 years ago by ★ 1.2k
0
votes
3
replies
2.7k
views
enrichGO() for unsupported organisms - library(clusterProfiler)
clusterProfiler go annotation
10.4 years ago cristina della beffa ▴ 30
1
vote
2
replies
3.6k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
10.4 years ago cristina della beffa ▴ 30
1
vote
3
replies
2.1k
views
buildKEGGmap doesn´t work - library(clusterProfiler)
clusterprofiler software error
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ▴ 30
1
vote
4
replies
5.9k
views
ClusterProfiler: enrichGO / compareCluster and Pvalue threeshold
clusterprofiler
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ▴ 140
1
vote
5
replies
2.8k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ▴ 680
0
votes
0
replies
1.8k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO Cancer Rgraphviz clusterProfiler DOSE GO Cancer Rgraphviz clusterProfiler DOSE
12.3 years ago Martin Morgan 25k
0
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3
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2.4k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO clusterProfiler DOSE GO clusterProfiler DOSE
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ★ 13k
0
votes
0
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1.1k
views
xzfile() cannot open the connection, lzma encoder error 5.
clusterProfiler clusterProfiler
12.4 years ago Jose Guillen ▴ 10
288 results • Page 6 of 6
Recent ...
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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