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Comment: Explannation for ROAST results
by
Jay
•
0
BTW, AP1 is a character, composed of gene entrez ID, so is HIF1, UPR, etc al. And the rownames of `expr.i` is also gene entrez ID.
Comment: DESEQ2 looking at main effects while controlling for a continuous variable
by
Lennie
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0
Thanks James for your help!
Sorry I am still a bit confused about the numerical contrast. In your example of c(0,1,0,0,0), where you are …
Answer: Merging annotation with differential expression output
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James W. MacDonald
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This is just a general R question that you should be able to easily answer by using Google. Or you could ask on stackoverflow or biostars, …
Answer: Annotation package for Manduca sexta
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shepherl
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Yes through the AnnotationHub
```
> library(AnnotationHub)
> ah = AnnotationHub()
snapshotDate(): 2024-10-28
> query(ah, "Manduc…
Comment: Ensembl site unresponsive via biomaRt
by
mdeea123
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10
Thanks for the link. I will contact them directly, I wish they had some sort of status page.
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