Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
customprodb
•
reset
0
votes
1
reply
870
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
2.4 years ago
Esraa
• 0
0
votes
1
reply
884
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
Esraa
• 0
0
votes
0
replies
541
views
customProDB: error aberrant fasta from SNV
customProDB
2.8 years ago
finoa.li
• 0
0
votes
0
replies
787
views
CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
3.2 years ago
04.marshal-decibel
• 0
0
votes
0
replies
1.1k
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
3.3 years ago
04.marshal-decibel
• 0
0
votes
1
reply
1.1k
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
6.0 years ago
laura.fancello
• 0
0
votes
1
reply
1.3k
views
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
6.3 years ago
Elena.M
• 0
4
votes
9
replies
4.5k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 17 months ago by
Yun
• 0 • written 6.7 years ago by
daniel.magnus.bader
▴ 50
0
votes
1
reply
1.3k
views
customProDB: "complex" SNV scenarios handling
customprodb
updated 7.2 years ago by
xiaojing.wang
▴ 50 • written 7.2 years ago by
iranmdl15
• 0
0
votes
1
reply
1.3k
views
Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 7.2 years ago by
xiaojing.wang
▴ 50 • written 7.4 years ago by
samupatt
• 0
0
votes
1
reply
1.3k
views
aaVariation function bug (Methonine instead of Leucine)
customprodb
translation
updated 7.2 years ago by
xiaojing.wang
▴ 50 • written 7.6 years ago by
georges.bedran
• 0
0
votes
3
replies
2.2k
views
calculateRPKM error in customProDB
software error
customprodb
updated 3.9 years ago by
Anne
• 0 • written 8.3 years ago by
javamng
▴ 10
0
votes
0
replies
1.2k
views
Annotation package generation error for customprodb for hg38
customprodb
7.7 years ago
arunima2
• 0
1
vote
1
reply
1.8k
views
error with calculateRPKM in customProDB
customProDB
software error
updated 3.9 years ago by
Anne
• 0 • written 8.3 years ago by
javamng
▴ 10
0
votes
1
reply
1.3k
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
georges.bedran
• 0
0
votes
0
replies
1.4k
views
PrepareAnnotationRefseq2 function error!
PGA
customprodb
9.2 years ago
yeh234
• 0
0
votes
1
reply
1.4k
views
CustomproDB JunctionType function
customprodb
updated 9.4 years ago by
xiaojing.wang
▴ 50 • written 9.4 years ago by
georges.bedran
• 0
0
votes
1
reply
1.4k
views
Pull request for customProDB package
customProDB
featurerequest
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
matt.chambers42
▴ 10
2
votes
4
replies
2.4k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
2
votes
2
replies
2.1k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
2
votes
4
replies
2.2k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl
macaque
dbsnp
customprodb
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Monkey Mart: The Ultimate Gaming Marketplace Experience https://monkeymart.one/
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of Monkey Mart, where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trad…
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
• 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards
• All
Popular Question
to
Fred Hutch (Recruiting)
▴ 40
Popular Question
to
shepherl
4.2k
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Ou, Jianhong
★ 1.3k
Locations
• All
Denmark,
11 minutes ago
United States,
39 minutes ago
Germany,
54 minutes ago
The Netherlands,
54 minutes ago
United States,
57 minutes ago
Traffic: 677 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6