Showing : customprodb • reset
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customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
2.4 years ago Esraa • 0
0
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1
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884
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Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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541
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customProDB: error aberrant fasta from SNV
customProDB
2.8 years ago finoa.li • 0
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0
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787
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CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
3.2 years ago 04.marshal-decibel • 0
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1.1k
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How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt customProDB
3.3 years ago 04.marshal-decibel • 0
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1
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1.1k
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customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB Ensembl connection biomart
6.0 years ago laura.fancello • 0
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1.3k
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CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf snv gatk customprodb inputvcf
6.3 years ago Elena.M • 0
4
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9
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4.5k
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Create protein sequences including variants from a VCF file
VariantAnnotation customProDB
updated 17 months ago by • 0 • written 6.7 years ago by ▴ 50
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1
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1.3k
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customProDB: "complex" SNV scenarios handling
customprodb
updated 7.2 years ago by ▴ 50 • written 7.2 years ago by • 0
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1
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1.3k
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Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 7.2 years ago by ▴ 50 • written 7.4 years ago by • 0
0
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1
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1.3k
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aaVariation function bug (Methonine instead of Leucine)
customprodb translation
updated 7.2 years ago by ▴ 50 • written 7.6 years ago by • 0
0
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3
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2.2k
views
calculateRPKM error in customProDB
software error customprodb
updated 3.9 years ago by • 0 • written 8.3 years ago by ▴ 10
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0
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1.2k
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Annotation package generation error for customprodb for hg38
customprodb
7.7 years ago arunima2 • 0
1
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1
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1.8k
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error with calculateRPKM in customProDB
customProDB software error
updated 3.9 years ago by • 0 • written 8.3 years ago by ▴ 10
0
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1
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1.3k
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 8.9 years ago by ▴ 50 • written 8.9 years ago by • 0
0
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0
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1.4k
views
PrepareAnnotationRefseq2 function error!
PGA customprodb
9.2 years ago yeh234 • 0
0
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1
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1.4k
views
CustomproDB JunctionType function
customprodb
updated 9.4 years ago by ▴ 50 • written 9.4 years ago by • 0
0
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1
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1.4k
views
Pull request for customProDB package
customProDB featurerequest
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by ▴ 10
2
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4
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2.4k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 10.3 years ago by ▴ 50 • written 10.3 years ago by • 0
2
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2
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2.1k
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customProDB: issues getting dbSNP data for human (hg19)
customprodb dbsnp refseq varianttools
updated 10.3 years ago by ▴ 50 • written 10.3 years ago by • 0
2
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4
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2.2k
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customProDB: issues getting dbSNP data for non-model organism
ensembl macaque dbsnp customprodb
updated 10.3 years ago by ▴ 50 • written 10.3 years ago by • 0
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Comment: Highly DE genes but small count difference within conditions by shy.hippopotamus.yxmb • 0
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Comment: copy number/LOH for Affy 100K by igkryycpinmshzugby • 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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