Showing : cycle • reset
0
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DESeq2 with GAGE
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10.5 years ago Luo Weijun ★ 1.6k
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1
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2.6k
views
SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not positive.
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updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ★ 13k
0
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3
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updated 13.9 years ago by ▴ 40 • written 13.9 years ago by ★ 2.0k
0
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3
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runSPIA() in graphite package
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updated 11.2 years ago by ▴ 20 • written 11.2 years ago by ▴ 420
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1
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1.9k
views
FW: URGENT Help required: Getting this error with GAGE analysis, input files attached
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updated 12.3 years ago by ▴ 200 • written 12.3 years ago by 25k
0
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1.9k
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How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
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13.8 years ago zhidong yuan ▴ 10
0
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3
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1.8k
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ReportingTools and gene annotation
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updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 340
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3
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pathway ID in KEGG.db
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updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 230
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1.7k
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getGEO problem
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14.2 years ago Sean Davis 21k
0
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8
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Filtering BAM files by start position for VariantTools
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updated 10.8 years ago by ▴ 250 • written 10.8 years ago by 25k
0
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1
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1.7k
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pathway analysis by SPIA using SPIA package vs graphite package
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10.3 years ago array chip ▴ 420
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0
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Cell cycle analysis of FACS data
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17.8 years ago Ulrik Stervbo ▴ 80
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qPCR event preview - April 2010
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Reading in data with HTqPCR
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13.9 years ago Heidi Dvinge ★ 2.0k
0
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1
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1.4k
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TLDA data
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updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 40
0
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4
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Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
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updated 19.2 years ago by ▴ 310 • written 19.2 years ago by ▴ 250
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paired sample LIMMA
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updated 12.9 years ago by ▴ 170 • written 12.9 years ago by ▴ 230
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1
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
0
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4
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1.3k
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Accessing old versions of bioc packages
cycle cycle
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ★ 1.3k
0
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1.3k
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structure of cfx file for HTqPCR
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11.2 years ago Guest User ★ 13k
0
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1
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Request for the assistance to use MEDME
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updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 90
0
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0
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JOB: Microarray Bioinformatics Specialist
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16.2 years ago Robert Castelo ★ 3.3k
0
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0
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doubt in HTqPCR
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12.6 years ago Heidi Dvinge ★ 2.0k
0
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
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updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
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2
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reviews for quality control
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updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 680
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Finding coding SNPs with predictCoding
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updated 12.1 years ago by ★ 1.7k • written 12.1 years ago by ★ 6.8k
0
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how to combine microarray data and phenotype data into a least squares analysis?
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15.6 years ago Amy Mikhail ▴ 460
0
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2
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1.2k
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how to combine microarray data and phenotype data into a least squares analysis?
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updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 40
0
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1
reply
1.1k
views
how does ShortRead function identify score system
cycle cycle
updated 11.6 years ago by 25k • written 11.6 years ago by ★ 2.0k
0
votes
1
reply
1.1k
views
FW: Request for the assistance to use MEDME
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updated 15.4 years ago by ▴ 30 • written 15.4 years ago by ▴ 90
0
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3
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ShortRead Per Cycle Score
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updated 14.0 years ago by 25k • written 14.0 years ago by ★ 1.5k
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Cho et al.'s Expression Dataset in Yeast
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updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
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Subsetting vcf file by subject
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11.1 years ago Valerie Obenchain ★ 6.8k
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sir
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updated 13.9 years ago by ▴ 40 • written 14.0 years ago by ★ 2.0k
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some basic questions
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updated 12.4 years ago by ★ 2.0k • written 12.4 years ago by ▴ 40
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0
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replicable of *PLGEM*
plgem cycle plgem cycle
13.6 years ago Pavelka, Norman ▴ 70
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Biostrings
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11.2 years ago Hervé Pagès 16k
0
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0
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Differentially Expressed Genes in Time Series with Replications
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17.3 years ago peter robinson ▴ 300
0
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1
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963
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affy 1 cycle vs 2 cycle labeling kit
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updated 19.9 years ago by ▴ 130 • written 19.9 years ago by ▴ 140
0
votes
2
replies
943
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some basic questions
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updated 12.4 years ago by 21k • written 12.4 years ago by ★ 13k
0
votes
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922
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Finding coding SNPs with predictCoding
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updated 12.0 years ago by ★ 1.7k • written 12.0 years ago by ★ 6.8k
0
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0
replies
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RMA verse GCRMA, low intensity
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19.2 years ago Matthew Hannah ▴ 940
0
votes
0
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882
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major alterations to GGdata/GGtools planned
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16.1 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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11.3 years ago Hans Thompson ▴ 30
0
votes
0
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Fwd: Unable to install packages
Microarray Annotation cdf probe cycle Microarray Annotation cdf probe cycle
12.8 years ago James W. MacDonald 65k
0
votes
2
replies
828
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about plot rglist
Microarray Cancer limma cycle Microarray Cancer limma cycle
updated 17.7 years ago by ★ 2.2k • written 17.7 years ago by 65k
0
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0
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821
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Re: webbioc and multtest
webbioc cycle webbioc cycle
20.4 years ago Colin A. Smith ▴ 220
0
votes
0
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815
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Release 1.1
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21.5 years ago Jeff Gentry ★ 3.9k
0
votes
0
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764
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New release of triplex package
cycle cycle
10.6 years ago Jiří Hon ▴ 20
0
votes
0
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743
views
LIMMA
limma cycle limma cycle
18.3 years ago Gordon Smyth 50k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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