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data.frame
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2
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573
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'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
Sukeerthi
• 0
0
votes
1
reply
604
views
?? Any R script for subtracting multiple controls from multiple patients in data.frame and assign 1 if output is less than 0
Rscript
data.frame
forloop
R
3.8 years ago
Ankit
▴ 20
1
vote
1
reply
1.2k
views
TCGA isoform expression quantification file - how to reshape data
data.frame
tcga
reshape data
updated 4.9 years ago by
Steve Lianoglou
★ 13k • written 5.0 years ago by
mario.zanfardino
▴ 160
0
votes
1
reply
730
views
Error in data.frame for limmaCtData function
software error
limma
data.frame
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
azmir004
• 0
0
votes
1
reply
981
views
Workflow Perraudeau F1000 - Bioconductor workflow for scRNA-seq
data.frame
read.table
updated 6.1 years ago by
davide risso
▴ 950 • written 6.1 years ago by
viviana.marin-esteban
• 0
0
votes
0
replies
987
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.2 years ago
aokoro
• 0
3
votes
2
replies
1.6k
views
AnnotationHub: A RPKM data.frame of Epigenomics RoadMap Project seems strange
annotationhub
roadmap project
rpkm
data.frame
7.6 years ago • updated 7.5 years ago
wcstcyx
▴ 30
0
votes
1
reply
1.1k
views
plotBed R data frame - last line plotted with line 1
sushi
plotBed
data.frame
8.0 years ago
waqasnayab
• 0
6
votes
3
replies
3.3k
views
How to transform cytometry data from CSV and not FCS file?
flowcore
transform
data.frame
updated 8.1 years ago by
Jiang, Mike
★ 1.3k • written 8.1 years ago by
Julia
▴ 20
3
votes
3
replies
1.4k
views
Sorting data frame derived from GRanges
granges
data.frame
sort
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
igor
▴ 40
2
votes
2
replies
870
views
Error when add `in` column into data.frame
data.frame
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
qiuworld.ou
• 0
2
votes
6
replies
1.7k
views
edgeR output error and data frame setting
EdgeR
data.frame
glmLRT
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
amoltej
▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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