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dna
•
reset
0
votes
2
replies
484
views
find tandem repeats in DNA
DNA
repeats
15 months ago
me-nobody
• 0
0
votes
1
reply
760
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
HELEN
• 0
0
votes
5
replies
2.5k
views
How to prevent readDNAStringSet() function from switching masked sequences (lowercase) to uppercase sequence?
biostrings
mask
repeatmasker
DNA
updated 3.3 years ago by
ivantsers
• 0 • written 6.5 years ago by
beausoleilmo
• 0
1
vote
1
reply
1.1k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 4.4 years ago by
anamaria
▴ 10 • written 4.4 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
598
views
what do these DNA alphabet means ? "-", "+", "."
DNA
alphabet
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
fjia304
• 0
2
votes
3
replies
1.8k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 6.4 years ago by
Erik Wright
▴ 150 • written 6.4 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.4k
views
ABI HRM data analysis
ABI
sequence
DNA
melting
curve
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
Prasanth
▴ 20
7 results • Page
1 of 1
Recent ...
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Comment: putting my own expression data in deseq2
by
ATpoint
★ 4.1k
> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
Votes
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
Comment: Why p value inconsistent when using different number of pathway score?
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