Showing : dnacopy • reset
0
votes
8
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2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.6 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
4
replies
1.3k
views
Removing libraries or using a particular function
Cancer DNAcopy Cancer DNAcopy
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ★ 1.9k
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
votes
3
replies
1.3k
views
CGH DNAcopy plot multiple samples on one plot
Cancer DNAcopy Cancer DNAcopy
updated 16.5 years ago by ▴ 50 • written 16.5 years ago by ★ 1.9k
0
votes
3
replies
1.4k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
6.7 years ago Alexandre Kuhn ▴ 20
0
votes
4
replies
1.8k
views
DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 9.8 years ago by ★ 6.8k • written 9.8 years ago by ▴ 30
0
votes
2
replies
1.1k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 20
0
votes
1
reply
1.3k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
1
reply
1.6k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
12.1 years ago Ekta Jain ▴ 370
0
votes
1
reply
1.5k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 8.4 years ago by • 0 • written 8.4 years ago by ▴ 40
0
votes
1
reply
910
views
DNAcopy installation error
DNAcopy DNAcopy
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 10
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 8.2 years ago by ▴ 170 • written 8.2 years ago by • 0
1
vote
2
replies
1.3k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 10
0
votes
3
replies
1.5k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 6.8 years ago by ▴ 130 • written 6.8 years ago by • 0
0
votes
1
reply
2.4k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 6.5 years ago by ▴ 680 • written 6.5 years ago by ▴ 60
0
votes
1
reply
1.3k
views
DNAcopy plot just one sample
Cancer DNAcopy Cancer DNAcopy
updated 16.8 years ago by 25k • written 16.8 years ago by ★ 1.9k
0
votes
3
replies
1.7k
views
"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 3.4 years ago by • 0 • written 6.3 years ago by • 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.8 years ago by ▴ 540 • written 5.8 years ago by • 0
0
votes
1
reply
1.2k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
0
votes
11
replies
1.5k
views
Create `Copy Number Array' Data Object error
DNAcopy
3.5 years ago • updated 3.4 years ago El • 0
0
votes
1
reply
895
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 280
0
votes
1
reply
2.0k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
0
votes
2
replies
1.3k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
12.9 years ago nac ▴ 280
2
votes
1
reply
1.5k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 12.9 years ago by 21k • written 12.9 years ago by ▴ 140
0
votes
1
reply
1.0k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 12.9 years ago by ▴ 40 • written 12.9 years ago by ★ 1.5k
0
votes
1
reply
1.3k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 12.6 years ago by ▴ 20 • written 12.6 years ago by ▴ 580
0
votes
2
replies
1.6k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 12.5 years ago by 21k • written 12.5 years ago by ▴ 110
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
2
replies
1.2k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 280
0
votes
1
reply
1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 280
0
votes
1
reply
1.1k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 370
0
votes
5
replies
1.7k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ▴ 70
0
votes
3
replies
1.4k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ★ 3.0k
0
votes
1
reply
1.4k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 11.3 years ago by ▴ 210 • written 11.3 years ago by ★ 13k
0
votes
1
reply
1.6k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.0 years ago by ▴ 40 • written 11.0 years ago by ★ 13k
0
votes
2
replies
1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
0
votes
1
reply
831
views
cghMCR bug?
Cancer DNAcopy cghMCR Cancer DNAcopy cghMCR
updated 17.3 years ago by ★ 2.9k • written 17.3 years ago by ★ 1.1k
0
votes
3
replies
3.6k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by ▴ 80
0
votes
0
replies
117
views
DNAcopy segment function not reproducible even when setting seed
DNAcopy
6 weeks ago BID • 0
0
votes
0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
votes
0
replies
829
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
16.8 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
784
views
how to get fewer cut points with DNAcopy or GLAD
SNP affy DNAcopy GLAD SNP affy DNAcopy GLAD
16.8 years ago Wittner, Ben ▴ 290
0
votes
0
replies
952
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.3 years ago Anguraj Sadanandam ▴ 10
0
votes
0
replies
1.2k
views
DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
15.7 years ago marco zucchelli ▴ 320
0
votes
0
replies
1.2k
views
cghMCR package - Jianhua Zhang
DNAcopy cghMCR DNAcopy cghMCR
14.3 years ago Luz G Alonso ▴ 20
0
votes
0
replies
1.1k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.3 years ago Daniel Rico ▴ 110
0
votes
0
replies
842
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.0 years ago Chiho Kwon ▴ 10
0
votes
0
replies
769
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.0 years ago nac ▴ 280
0
votes
0
replies
1.0k
views
Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
12.4 years ago nac ▴ 280
0
votes
0
replies
972
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
12.4 years ago nac ▴ 280
50 results • Page 1 of 1
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Answer: How to save the DEXSeq results by Michael Love 41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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