Bioconductor Dtu

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1.7k

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DTU DEXSeq RNADTU

updated 3.8 years ago by Alejandro Reyes ★ 1.9k • written 4.2 years ago by Nirad ▴ 10

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1.8k

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DESeq2 DRIMSeq dtu RNASeq

4.3 years ago sbcn ▴ 80

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2.3k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 4.4 years ago by k.vitting.seerup ▴ 120 • written 4.6 years ago by jbono ▴ 10

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1.7k

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DRIMSeq R DTU technical replicates deseq2

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by poecile.pal • 0

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3.1k

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RATs RNA-Seq Isoforms DTU expression

updated 6.3 years ago by fruce_ki ▴ 20 • written 6.3 years ago by UserAnonyme • 0

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1.8k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.5 years ago by Michael Love 43k • written 6.8 years ago by fiona.dick91 ▴ 60

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4.5k

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tximport dtu salmon TPM rnaseqDTU

written 6.6 years ago by fiona.dick91 ▴ 60

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3.3k

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rnaseqDTU dtu

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by rbenel ▴ 50

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1.6k

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DTU DRIMSeq rnaseqDTU

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by fiona.dick91 ▴ 60

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2.5k

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drimseq stageR dtu salmon rna seq

updated 7.3 years ago by Koen Van den Berge ▴ 180 • written 7.3 years ago by fiona.dick91 ▴ 60

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1.6k

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drimseq DTU

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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