Bioconductor Dtu

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1.3k

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DTU DEXSeq RNADTU

updated 2.8 years ago by Alejandro Reyes ★ 1.9k • written 3.3 years ago by Nirad ▴ 10

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1.4k

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DESeq2 DRIMSeq dtu RNASeq

3.4 years ago • updated 3.3 years ago sbcn ▴ 80

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1.8k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 3.4 years ago by k.vitting.seerup ▴ 120 • written 3.6 years ago by jbono ▴ 10

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1.3k

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DRIMSeq R DTU technical replicates deseq2

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by poecile.pal • 0

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2.3k

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RATs RNA-Seq Isoforms DTU expression

updated 5.4 years ago by fruce_ki ▴ 20 • written 5.4 years ago by UserAnonyme • 0

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1.6k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.6 years ago by Michael Love 42k • written 5.9 years ago by fiona.dick91 ▴ 60

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3.7k

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tximport dtu salmon TPM rnaseqDTU

written 5.6 years ago by fiona.dick91 ▴ 60

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2.6k

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rnaseqDTU dtu

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by rbenel ▴ 40

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1.3k

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DTU DRIMSeq rnaseqDTU

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by fiona.dick91 ▴ 60

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2.0k

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drimseq stageR dtu salmon rna seq

updated 6.4 years ago by Koen Van den Berge ▴ 180 • written 6.4 years ago by fiona.dick91 ▴ 60

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1.4k

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drimseq DTU

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

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