Bioconductor Dtu

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1.3k

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DTU DEXSeq RNADTU

updated 2.8 years ago by Alejandro Reyes ★ 1.9k • written 3.2 years ago by Nirad ▴ 10

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1.4k

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DESeq2 DRIMSeq dtu RNASeq

3.3 years ago sbcn ▴ 80

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1.8k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 3.4 years ago by k.vitting.seerup ▴ 120 • written 3.6 years ago by jbono ▴ 10

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1.3k

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DRIMSeq R DTU technical replicates deseq2

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by poecile.pal • 0

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2.2k

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RATs RNA-Seq Isoforms DTU expression

updated 5.3 years ago by fruce_ki ▴ 20 • written 5.3 years ago by UserAnonyme • 0

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1.5k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.5 years ago by Michael Love 42k • written 5.8 years ago by fiona.dick91 ▴ 60

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3.6k

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tximport dtu salmon TPM rnaseqDTU

written 5.6 years ago by fiona.dick91 ▴ 60

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2.5k

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rnaseqDTU dtu

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by rbenel ▴ 40

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1.3k

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DTU DRIMSeq rnaseqDTU

updated 5.8 years ago by Michael Love 42k • written 5.8 years ago by fiona.dick91 ▴ 60

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2.0k

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drimseq stageR dtu salmon rna seq

updated 6.3 years ago by Koen Van den Berge ▴ 180 • written 6.3 years ago by fiona.dick91 ▴ 60

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1.4k

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drimseq DTU

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k