Bioconductor ESet

Showing : eSet • reset

vote

replies

1.3k

views

affy eset

updated 3.8 years ago by James W. MacDonald 67k • written 3.8 years ago by AZ ▴ 30

votes

replies

1.7k

views

biobase expressionset eset

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by andrew.birnberg ▴ 20

votes

replies

961

views

Minfi eset

6.9 years ago SplittingInfinity ▴ 60

votes

11k

views

microarray affy eset

updated 7.8 years ago by Gordon Smyth 51k • written 7.8 years ago by mathavanbioinfo ▴ 20

vote

replies

3.3k

views

biobase eSet expressionSet

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by Guido Hooiveld ★ 4.1k

votes

replies

1.6k

views

subsetting eSet

8.7 years ago Shamim Sarhadi ▴ 20

votes

1.3k

views

scan.upc eset

updated 9.3 years ago by Stephen Piccolo ▴ 600 • written 9.3 years ago by Jo ▴ 30

votes

1.4k

views

limma eset error ebayes

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by Vani ▴ 20

votes

replies

9.4k

views

limma differential expression design matrix error eset

updated 9.4 years ago by Aaron Lun ★ 28k • written 9.4 years ago by Vani ▴ 20

vote

1.4k

views

limma microarray eset

9.4 years ago Vani ▴ 20

votes

replies

2.9k

views

eset annotation

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by colonppg ▴ 30

votes

replies

8.8k

views

eset annotation

updated 9.4 years ago by Diego Diez ▴ 760 • written 9.4 years ago by Vani ▴ 20

votes

replies

4.3k

views

methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by martens.christopher • 0

13 results • Page 1 of 1

Recent ...

Replies

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20