Bioconductor ESet

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12k

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microarray affy eset

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by mathavanbioinfo ▴ 20

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9.9k

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limma differential expression design matrix error eset

updated 9.6 years ago by Aaron Lun ★ 28k • written 9.6 years ago by Vani ▴ 20

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9.0k

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eset annotation

updated 9.7 years ago by Diego Diez ▴ 760 • written 9.7 years ago by Vani ▴ 20

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4.4k

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methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by martens.christopher • 0

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3.4k

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biobase eSet expressionSet

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Guido Hooiveld ★ 4.1k

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3.0k

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eset annotation

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by colonppg ▴ 30

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1.9k

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biobase expressionset eset

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by andrew.birnberg ▴ 20

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1.7k

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subsetting eSet

8.9 years ago Shamim Sarhadi ▴ 20

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1.5k

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limma microarray eset

9.6 years ago Vani ▴ 20

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1.5k

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limma eset error ebayes

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Vani ▴ 20

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1.4k

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affy eset

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by AZ ▴ 30

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1.4k

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scan.upc eset

updated 9.5 years ago by Stephen Piccolo ▴ 600 • written 9.5 years ago by Jo ▴ 30

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1.0k

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Minfi eset

7.1 years ago SplittingInfinity ▴ 60

13 results • Page 1 of 1

Recent ...

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Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Comment: How to visualize these pathways using pathview by ingrid.h • 0

Yes I have seen it, thanks.

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo