Biostar ESet

Showing : eSet • reset

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8.9k

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microarray affy eset

updated 6.0 years ago by Gordon Smyth 47k • written 6.0 years ago by mathavanbioinfo ▴ 20

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7.6k

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eset annotation

updated 7.6 years ago by Diego Diez ▴ 760 • written 7.6 years ago by Vani ▴ 20

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6.6k

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limma differential expression design matrix error eset

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Vani ▴ 20

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3.1k

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methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 7.6 years ago by James W. MacDonald 62k • written 7.6 years ago by martens.christopher • 0

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2.3k

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biobase eSet expressionSet

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Guido Hooiveld ★ 3.5k

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2.3k

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eset annotation

updated 7.6 years ago by James W. MacDonald 62k • written 7.6 years ago by colonppg ▴ 30

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1.2k

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subsetting eSet

6.9 years ago Shamim Sarhadi ▴ 20

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1.1k

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limma microarray eset

7.6 years ago Vani ▴ 20

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1.0k

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limma eset error ebayes

updated 7.6 years ago by James W. MacDonald 62k • written 7.6 years ago by Vani ▴ 20

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950

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biobase expressionset eset

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by andrew.birnberg ▴ 20

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895

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scan.upc eset

updated 7.5 years ago by Stephen Piccolo ▴ 590 • written 7.5 years ago by Jo ▴ 20

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608

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affy eset

updated 2.0 years ago by James W. MacDonald 62k • written 2.0 years ago by AZ ▴ 30

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566

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Minfi eset

5.1 years ago SplittingInfinity ▴ 60

13 results • Page 1 of 1

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Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Comment: Atena package - error (new user) by beatriz.calvo ▴ 30

Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k