Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
egsea
•
reset
0
votes
2
replies
1.2k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
6.0 years ago
irizarnaunk
• 0
0
votes
5
replies
2.0k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 5.3 years ago by
Monther Alhamdoosh
▴ 40 • written 5.3 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
830
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 9 months ago by
shepherl
3.4k • written 9 months ago by
Jenny Drnevich
★ 2.0k
8
votes
6
replies
17k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 2.0 years ago by
calvin99
▴ 10 • written 5.7 years ago by
sina.nassiri
▴ 120
1
vote
1
reply
808
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
5.6 years ago
RV
• 0
0
votes
4
replies
1.3k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 6.5 years ago by
Monther Alhamdoosh
▴ 40 • written 6.5 years ago by
yingchen
• 0
2
votes
3
replies
1.2k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
6.2 years ago
Pekka Kohonen
▴ 190
2
votes
7
replies
1.3k
views
EGSEA - failing to write report
EGSEA
write
updated 6.1 years ago by
Monther Alhamdoosh
▴ 40 • written 6.1 years ago by
mforde84
▴ 20
0
votes
1
reply
1.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 5.1 years ago by
Gordon Smyth
47k • written 5.1 years ago by
belmore
• 0
6
votes
6
replies
2.0k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 2.4 years ago by
Martin
• 0 • written 3.8 years ago by
pgugger
▴ 70
0
votes
0
replies
577
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
5.2 years ago
stefano.mangiola
▴ 10
0
votes
2
replies
843
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
3.6 years ago
fgol
▴ 10
1
vote
0
replies
649
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
5.1 years ago
john.thompson
▴ 10
1
vote
0
replies
449
views
EGSEA - clarification of values in the Stats Table
egsea
limma
3.6 years ago
rocanja
▴ 60
14 results • Page
1 of 1
Recent ...
Replies
Comment: How to combine two DESeq2 objects (dds) for analysis
by
ATpoint
★ 2.4k
Please get used to use dedicated setter and getter functions rather than accessing slots manually. The structure of a data object might cha…
Comment: How to combine two DESeq2 objects (dds) for analysis
by
TzuChiao
▴ 10
Hello Luke, Since DESeq2 takes raw counts, and provided that you only have the DESeq objects, you can extract raw counts with ```r count_…
Comment: deseq2 normalized counts as an input to deseq2
by
yomani.sarathkumara
• 0
Hi Michael, I have a similar question regarding the normalization of my RNAseq data. I used VSN normalization on pre-filtered data as f…
Comment: Annotated dendogram (tree) from tbl_graph
by
christian.dina
• 0
Thx, actually I have started reading it and think at some point I'll get it. However, I was looking for something that would not need me …
Comment: pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
by
덕윤
• 0
Really appreciate your help :) At last, I can fix my problem. I have learned to check my code.
Votes
Comment: How to combine two DESeq2 objects (dds) for analysis
Comment: How to combine two DESeq2 objects (dds) for analysis
How many parameters should be included in the model design for deseq2?
Answer: Failed to install Biobase
Answer: Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
Awards
• All
Prophet
to
linouhao
▴ 20
Popular Question
to
dr
▴ 10
Commentator
to
James W. MacDonald
62k
Popular Question
to
Sam
▴ 10
Scholar
to
ATpoint
★ 2.4k
Locations
• All
Italy,
just now
WEHI, Melbourne, Australia,
9 minutes ago
New Zealand,
9 minutes ago
Germany,
20 minutes ago
Denmark,
29 minutes ago
Traffic: 466 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6