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emptydrops
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0
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714
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Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
11 months ago
rocanja
▴ 60
0
votes
1
reply
1.1k
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 21 months ago by
Peter Hickey
▴ 750 • written 21 months ago by
sandra.garces.19
• 0
4
votes
5
replies
3.5k
views
`emptyDrops()` calling 'too many' non-empty droplets
DropletUtils
emptyDrops
scRNA
scRNAseq
10x
2.6 years ago • updated 2.5 years ago
Peter Hickey
▴ 750
1
vote
1
reply
1.3k
views
Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
DropletUtils
emptyDrops
10x
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
Peter Hickey
▴ 750
4
votes
5
replies
2.4k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 4.3 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
C T
▴ 140
5
votes
1
reply
5.1k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 2.5 years ago by
Stefano Mangiola
▴ 20 • written 5.5 years ago by
shbrief
▴ 20
0
votes
2
replies
1.4k
views
Scalability of emptyDrops() running times
dropletutils
emptydrops
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
rosano
• 0
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Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
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Thank you
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Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
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43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
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