Bioconductor Emptydrops

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1.0k

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scrn 10x scRNAseq emptyDrops DropletUtils

5 months ago Peter Hickey ▴ 760

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1.2k

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CellRanger emptyDrops scRNAseq 10X

22 months ago rocanja ▴ 60

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1.6k

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SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.7 years ago by sandra.garces.19 • 0

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4.8k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.5 years ago • updated 3.4 years ago Peter Hickey ▴ 760

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1.7k

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DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

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3.1k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.2 years ago by Aaron Lun ★ 29k • written 6.4 years ago by C T ▴ 140

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5.7k

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DropletUtils EmptyDrops simpleSingleCell

updated 3.5 years ago by Stefano Mangiola ▴ 40 • written 6.5 years ago by shbrief ▴ 20

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1.7k

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dropletutils emptydrops

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by rosano • 0

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Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0

It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…

Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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