Bioconductor Emptydrops

Showing : emptydrops • reset

votes

replies

964

views

scrn 10x scRNAseq emptyDrops DropletUtils

4 months ago Peter Hickey ▴ 760

votes

replies

1.1k

views

CellRanger emptyDrops scRNAseq 10X

21 months ago rocanja ▴ 60

votes

1.5k

views

SingleCell emptyDrops 10X

updated 2.6 years ago by Peter Hickey ▴ 760 • written 2.6 years ago by sandra.garces.19 • 0

votes

replies

4.3k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

3.4 years ago Peter Hickey ▴ 760

vote

1.6k

views

DropletUtils emptyDrops 10x

updated 4.9 years ago by Aaron Lun ★ 29k • written 4.9 years ago by Peter Hickey ▴ 760

votes

replies

3.0k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.2 years ago by Aaron Lun ★ 29k • written 6.3 years ago by C T ▴ 140

votes

5.6k

views

DropletUtils EmptyDrops simpleSingleCell

updated 3.4 years ago by Stefano Mangiola ▴ 40 • written 6.4 years ago by shbrief ▴ 20

votes

replies

1.7k

views

dropletutils emptydrops

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by rosano • 0

8 results • Page 1 of 1

Recent ...

Replies

Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0

You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by victor04052024 • 0

The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…

Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k

We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.

Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0

I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…

Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All