Bioconductor Emptydrops

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4.4k

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DropletUtils EmptyDrops simpleSingleCell

updated 20 months ago by Stefano Mangiola ▴ 10 • written 4.7 years ago by shbrief ▴ 20

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2.3k

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

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2.0k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.5 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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1.0k

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DropletUtils emptyDrops 10x

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by Peter Hickey ▴ 740

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1.0k

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dropletutils emptydrops

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by rosano • 0

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660

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SingleCell emptyDrops 10X

updated 11 months ago by Peter Hickey ▴ 740 • written 11 months ago by sandra.garces.19 • 0

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201

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CellRanger emptyDrops scRNAseq 10X

5 weeks ago rocanja ▴ 60

7 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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