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Showing :
exons
•
reset
3
votes
7
replies
1.5k
views
To find Differential expressed exons using xps package
xps
exons
updated 8.1 years ago by
cstrato
★ 3.9k • written 8.1 years ago by
Biologist
▴ 110
2
votes
6
replies
2.0k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga
tcgabiolinks
microarray
exons
oligonucleotide
updated 7.9 years ago by
Tiago C. Silva
▴ 270 • written 8.0 years ago by
Fernando
• 0
6
votes
4
replies
2.6k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb
genome
exons
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Bogdan
▴ 670
2
votes
4
replies
1.4k
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb
txdb.hsapiens.ucsc.hg19.knowngene
granges
exons
ucsc
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
olavur
▴ 10
0
votes
3
replies
1.2k
views
Increased number of total exons in DEXSeq
dexseq
exons
grch37
7.2 years ago • updated 7.1 years ago
aditi
▴ 20
2
votes
3
replies
904
views
Human Exon: arome.affymetrix residuals Inf value
exons
exon array analysis
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
GENOMIC_region
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
rubi
▴ 110
0
votes
1
reply
2.0k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate
exons
txdb.hsapiens.ucsc.hg19.knowngene
8.8 years ago
adnan.niazi
• 0
0
votes
1
reply
1.3k
views
Extract exon features from overlapping genes
GenomicFeatures
exons
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
Emilie
• 0
0
votes
0
replies
660
views
Filtering probesets for HuEx ST1.0 after probeset normalization
microarray
exons
probefiltering
5.5 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.7 years ago
Jose M Garcia Manteiga
▴ 310
11 results • Page
1 of 1
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
• 0
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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