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Showing :
experimenthub
•
reset
2
votes
2
replies
1.9k
views
ExperimentHub full metadata
ExperimentHub
written 6 months ago by
igor
▴ 50
3
votes
3
replies
706
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
igor
▴ 50
0
votes
5
replies
2.3k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 19 months ago by
shepherl
4.3k • written 19 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
700
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
19 months ago
shepherl
4.3k
1
vote
1
reply
772
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Tim Barry
• 0
6
votes
12
replies
8.8k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
2.2 years ago • updated 21 months ago
shepherl
4.3k
0
votes
4
replies
911
views
Storing directories inside an ExperimentHub package?
ExperimentHub
21 months ago
Tim Barry
• 0
1
vote
5
replies
4.1k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 20 months ago by
Jiayu
• 0 • written 2.2 years ago by
yanling
• 0
0
votes
1
reply
1.7k
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 2.9 years ago by
Peter Hickey
▴ 760 • written 2.9 years ago by
cathalgking
▴ 10
0
votes
3
replies
1.2k
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
3.5 years ago • updated 3.4 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.8k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
4.8 years ago
shepherl
4.3k
8
votes
33
replies
6.1k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 5.1 years ago by
friedmanhiccc
▴ 10 • written 5.4 years ago by
richardallenfriedmanbrooklyn
▴ 30
8
votes
16
replies
9.8k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 5.5 years ago by
shepherl
4.3k • written 5.5 years ago by
enricoferrero
▴ 680
2
votes
2
replies
1.2k
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 6.8 years ago by
shepherl
4.3k • written 6.8 years ago by
story.benjamin
▴ 20
4
votes
10
replies
2.8k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
7.3 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
1.1k
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 7.4 years ago by
shepherl
4.3k • written 7.4 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
3.4k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
2.1k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
7.7 years ago
slinker
▴ 20
5
votes
2
replies
2.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Mike Smith
★ 6.6k
5
votes
11
replies
4.1k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 9.1 years ago by
Levi Waldron
★ 1.1k • written 9.1 years ago by
morganx
▴ 10
5
votes
3
replies
2.1k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 9.1 years ago by
Lucas Schiffer
▴ 240 • written 9.2 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.6k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
9.2 years ago
francois.collin
• 0
4
votes
7
replies
2.4k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 9.4 years ago by
Valerie Obenchain
★ 6.8k • written 9.4 years ago by
Michael Love
43k
0
votes
2
replies
2.0k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
shinx558
• 0
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Hugo Gruson
• 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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