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Showing :
experimenthub
•
reset
2
votes
2
replies
1.9k
views
ExperimentHub full metadata
ExperimentHub
written 5 months ago by
igor
▴ 50
3
votes
3
replies
645
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 6 months ago by
James W. MacDonald
68k • written 6 months ago by
igor
▴ 50
0
votes
5
replies
2.1k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 17 months ago by
shepherl
4.2k • written 17 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
675
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
17 months ago
shepherl
4.2k
1
vote
1
reply
702
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Tim Barry
• 0
6
votes
12
replies
8.6k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
2.1 years ago • updated 19 months ago
shepherl
4.2k
0
votes
4
replies
846
views
Storing directories inside an ExperimentHub package?
ExperimentHub
20 months ago
Tim Barry
• 0
1
vote
5
replies
4.0k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 19 months ago by
Jiayu
• 0 • written 2.0 years ago by
yanling
• 0
0
votes
1
reply
1.6k
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 2.7 years ago by
Peter Hickey
▴ 760 • written 2.7 years ago by
cathalgking
▴ 10
0
votes
3
replies
1.2k
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
3.4 years ago • updated 3.3 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.7k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
4.7 years ago
shepherl
4.2k
8
votes
33
replies
5.9k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 4.9 years ago by
friedmanhiccc
▴ 10 • written 5.2 years ago by
richardallenfriedmanbrooklyn
▴ 30
8
votes
16
replies
9.5k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 5.3 years ago by
shepherl
4.2k • written 5.3 years ago by
enricoferrero
▴ 680
2
votes
2
replies
1.1k
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 6.7 years ago by
shepherl
4.2k • written 6.7 years ago by
story.benjamin
▴ 20
4
votes
10
replies
2.7k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
7.2 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
1.1k
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 7.3 years ago by
shepherl
4.2k • written 7.3 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
3.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
2.0k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
7.6 years ago
slinker
▴ 20
5
votes
2
replies
2.6k
views
Setting ExperimentHub Cache Location
experimenthub
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Mike Smith
★ 6.6k
5
votes
11
replies
4.0k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 9.0 years ago by
Levi Waldron
★ 1.1k • written 9.0 years ago by
morganx
▴ 10
5
votes
3
replies
2.0k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 9.0 years ago by
Lucas Schiffer
▴ 240 • written 9.1 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.6k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
9.1 years ago
francois.collin
• 0
4
votes
7
replies
2.3k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Michael Love
43k
0
votes
2
replies
1.9k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 9.4 years ago by
Valerie Obenchain
★ 6.8k • written 9.4 years ago by
shinx558
• 0
24 results • Page
1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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