Bioconductor Fold change

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6.2k

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R deseq2 edger differential gene expression fold change

updated 2.9 years ago by ATpoint ★ 4.7k • written 6.7 years ago by Beginner ▴ 60

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2.8k

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diffBind Fold Change

updated 3.9 years ago by Joe Nicholas • 0 • written 6.2 years ago by joseluis.ruiz • 0

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1.7k

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edger differential expression genes fold change

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

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1.2k

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mfuzz fold change log2 STANDARDISATION

6.7 years ago prakashpandey1111 • 0

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1.7k

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ballgown stattest fold change

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by Claudia ▴ 10

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2.9k

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edgeR DE analysis fold change cpm

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by Sara ▴ 20

7 results • Page 1 of 1

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Answer: Annotation package for Manduca sexta by shepherl 4.1k

Yes through the AnnotationHub ``` > library(AnnotationHub) > ah = AnnotationHub() snapshotDate(): 2024-10-28 > query(ah, "Manduc…

Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10

Thanks for the link. I will contact them directly, I wish they had some sort of status page.

Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k

I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…

Comment: pairedGSEA input files by shdam ▴ 10

Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …

Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

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Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

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