Showing : fold change • reset
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R deseq2 edger differential gene expression fold change
updated 3.5 years ago by ★ 5.0k • written 7.3 years ago by ▴ 60
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diffBind report Fold scale
diffBind Fold Change
updated 4.5 years ago by • 0 • written 6.8 years ago by • 0
2
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4
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1.9k
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Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
7.4 years ago prakashpandey1111 • 0
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What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 7.6 years ago by 68k • written 7.6 years ago by ▴ 80
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Question on fold change calculation for microarray data
logfc limma fold change
updated 9.2 years ago by 53k • written 9.2 years ago by ▴ 10
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About differentially expressed genes that found by edgeR
edgeR DE analysis fold change cpm
updated 9.2 years ago by ★ 7.9k • written 9.2 years ago by ▴ 20
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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