Bioconductor Fold change

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R deseq2 edger differential gene expression fold change

updated 2.8 years ago by ATpoint ★ 4.6k • written 6.6 years ago by Beginner ▴ 60

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diffBind Fold Change

updated 3.7 years ago by Joe Nicholas • 0 • written 6.1 years ago by joseluis.ruiz • 0

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1.6k

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edger differential expression genes fold change

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by ilovesuperheroes1993 • 0

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1.1k

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mfuzz fold change log2 STANDARDISATION

6.6 years ago prakashpandey1111 • 0

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ballgown stattest fold change

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by Arindam ▴ 80

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logfc limma fold change

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by Claudia ▴ 10

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edgeR DE analysis fold change cpm

updated 8.5 years ago by Ryan C. Thompson ★ 7.9k • written 8.5 years ago by Sara ▴ 20

7 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k