Bioconductor Fold change

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7.6k

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R deseq2 edger differential gene expression fold change

updated 3.7 years ago by ATpoint ★ 5.0k • written 7.5 years ago by Beginner ▴ 60

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3.1k

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diffBind Fold Change

updated 4.7 years ago by Joe Nicholas • 0 • written 7.0 years ago by joseluis.ruiz • 0

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2.0k

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edger differential expression genes fold change

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by ilovesuperheroes1993 • 0

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1.5k

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mfuzz fold change log2 STANDARDISATION

7.5 years ago prakashpandey1111 • 0

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1.9k

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ballgown stattest fold change

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by Arindam ▴ 80

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1.9k

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logfc limma fold change

updated 9.4 years ago by Gordon Smyth 53k • written 9.4 years ago by Claudia ▴ 10

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3.2k

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edgeR DE analysis fold change cpm

updated 9.4 years ago by Ryan C. Thompson ★ 7.9k • written 9.4 years ago by Sara ▴ 20

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Comment: ATACseq rudimentary questions by 4747 • 0

Thank you so much for being detailed, all makes sense now

Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k

You actually haven't done any DE analysis at all, you've just selected for genes with either zero or large D0 counts. Another issue is tha…

Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k

For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…

Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k

The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…

Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0

Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…

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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?

A: limma-voom duplicateCorrelation once or twice, difference?

A: limma: comparison of repeat measurements - blocking or within-subject correlatio

Answer: DecideTest vs topTAGs in edgeR

A: LIMMA time series spline model.matrix design setup

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