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fold change
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.8 years ago by
ATpoint
★ 4.6k • written 6.6 years ago by
Beginner
▴ 60
1
vote
2
replies
2.7k
views
diffBind report Fold scale
diffBind
Fold Change
updated 3.8 years ago by
Joe Nicholas
• 0 • written 6.1 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.6k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
1.1k
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.6 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.6k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
Arindam
▴ 80
0
votes
1
reply
1.7k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 8.5 years ago by
Gordon Smyth
52k • written 8.5 years ago by
Claudia
▴ 10
2
votes
7
replies
2.8k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 8.5 years ago by
Ryan C. Thompson
★ 7.9k • written 8.5 years ago by
Sara
▴ 20
7 results • Page
1 of 1
Recent ...
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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