Bioconductor Fold change

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5.6k

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R deseq2 edger differential gene expression fold change

updated 2.5 years ago by ATpoint ★ 4.5k • written 6.4 years ago by Beginner ▴ 60

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2.5k

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diffBind Fold Change

updated 3.5 years ago by Joe Nicholas • 0 • written 5.8 years ago by joseluis.ruiz • 0

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1.5k

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edger differential expression genes fold change

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by ilovesuperheroes1993 • 0

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1.1k

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mfuzz fold change log2 STANDARDISATION

6.4 years ago prakashpandey1111 • 0

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1.5k

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ballgown stattest fold change

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by Arindam ▴ 80

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1.7k

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logfc limma fold change

updated 8.2 years ago by Gordon Smyth 51k • written 8.2 years ago by Claudia ▴ 10

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2.7k

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edgeR DE analysis fold change cpm

updated 8.3 years ago by Ryan C. Thompson ★ 7.9k • written 8.3 years ago by Sara ▴ 20

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Comment: Bioconductor 3.18 is Released! by thelmatertl • 0

This is a release that expresses gratitude to the developers and community members for their contributions and the new features enhance the…

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

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Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20