Bioconductor Gene symbol

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deseq2 dataframe ensembl gene id gene symbol entrezid

updated 12 days ago by Erika • 0 • written 5.3 years ago by jason.williams ▴ 10

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2.6k

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deseq2 gene symbol ensembl

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by thkapell ▴ 10

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1.1k

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GRanges gene symbol IdeoViz

6.3 years ago Arman Shahrisa ▴ 20

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2.0k

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dmrcate gene symbol coordinate

6.7 years ago 574233829 • 0

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1.7k

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transcript_id gene symbol

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Jo ▴ 30

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14k

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biomart gene symbol

updated 9.7 years ago by Diego Diez ▴ 760 • written 9.9 years ago by chang02_23 ▴ 30

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4.2k

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Pathview KEGG annotation gene symbol visualization

updated 9.8 years ago by Luo Weijun ★ 1.6k • written 9.8 years ago by alakatos ▴ 130

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3.4k

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biomart homo.sapiens genome regions gene symbol

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by NS ▴ 60

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25k

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tcga cnv gene symbol coordinate

updated 2.4 years ago by James W. MacDonald 68k • written 9.9 years ago by NS ▴ 60

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3.0k

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probe filter subset gene symbol affy

10.1 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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