Bioconductor Gene symbol

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3.1k

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deseq2 dataframe ensembl gene id gene symbol entrezid

4.9 years ago jason.williams ▴ 10

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2.3k

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deseq2 gene symbol ensembl

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by thkapell ▴ 10

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1.1k

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GRanges gene symbol IdeoViz

6.0 years ago Arman Shahrisa ▴ 20

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1.9k

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dmrcate gene symbol coordinate

6.3 years ago 574233829 • 0

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1.6k

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transcript_id gene symbol

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by Jo ▴ 30

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14k

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biomart gene symbol

updated 9.3 years ago by Diego Diez ▴ 760 • written 9.5 years ago by chang02_23 ▴ 30

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3.8k

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Pathview KEGG annotation gene symbol visualization

updated 9.4 years ago by Luo Weijun ★ 1.6k • written 9.4 years ago by alakatos ▴ 130

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3.2k

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biomart homo.sapiens genome regions gene symbol

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by NS ▴ 60

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24k

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tcga cnv gene symbol coordinate

updated 24 months ago by James W. MacDonald 67k • written 9.5 years ago by NS ▴ 60

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2.9k

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probe filter subset gene symbol affy

9.7 years ago alakatos ▴ 130

10 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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