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Showing :
gene symbol
•
reset
0
votes
4
replies
2.5k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2
dataframe
ensembl gene id
gene symbol
entrezid
4.4 years ago
jason.williams
• 0
0
votes
3
replies
1.9k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2
gene symbol
ensembl
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
thkapell
▴ 10
1
vote
2
replies
935
views
Obtain GRanges object by gene names
GRanges
gene symbol
IdeoViz
5.5 years ago
Arman Shahrisa
▴ 20
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
5.8 years ago
574233829
• 0
0
votes
3
replies
1.5k
views
Choosing most accurate gene symbol from multiple gene symbols
transcript_id
gene symbol
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
Jo
▴ 30
2
votes
4
replies
13k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart
gene symbol
updated 8.8 years ago by
Diego Diez
▴ 760 • written 9.0 years ago by
chang02_23
▴ 30
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview
KEGG
annotation
gene symbol
visualization
updated 8.9 years ago by
Luo Weijun
★ 1.6k • written 8.9 years ago by
alakatos
▴ 130
3
votes
3
replies
2.9k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart
homo.sapiens
genome regions
gene symbol
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
NS
▴ 60
27
votes
21
replies
23k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 18 months ago by
James W. MacDonald
65k • written 9.0 years ago by
NS
▴ 60
0
votes
3
replies
2.6k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.2 years ago
alakatos
▴ 130
10 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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