Showing : genomes • reset
3
votes
4
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1.2k
views
Limit on number of sequence files for forging a BSgenome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.1 years ago by ★ 6.5k • written 11.1 years ago by ▴ 220
2
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3
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5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
9.8 years ago enricoferrero ▴ 660
1
vote
1
reply
413
views
MSc student
genomes
updated 15 months ago by ▴ 780 • written 15 months ago by • 0
1
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1
reply
1.6k
views
GenomeViz
Proteomics genomes Proteomics genomes
updated 8.2 years ago by • 0 • written 19.3 years ago by ▴ 80
1
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0
replies
1.4k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.5 years ago bulfin.triona ▴ 10
0
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1
reply
944
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 30
0
votes
0
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1.3k
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Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.0 years ago Palmer, Lance ▴ 30
0
votes
0
replies
944
views
PhD Studentship: Spatiotemporal Organisation of Gene Expression
genomes attract genomes attract
18.8 years ago Jan T. Kim ▴ 70
0
votes
0
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1.2k
views
bioMart 1.6.3 missing mysql=TRUE in useMart
Microarray Annotation GO annotate affy biomaRt genomes Microarray Annotation GO annotate
17.6 years ago mkeehan@lic.co.nz ▴ 10
0
votes
2
replies
1.2k
views
error from rsamtools on 1000 genomes
Cancer HapMap Rsamtools genomes Cancer HapMap Rsamtools genomes
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 100
0
votes
0
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1.3k
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
12.6 years ago Claude Chelala ▴ 40
0
votes
1
reply
877
views
New bosTau4 genome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by 16k
0
votes
0
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847
views
Intermediate BioC Course 21-23 Jan 09: Analyzing Microarray and Sequencing Experiments
Microarray genomes Microarray genomes
15.4 years ago Patrick Aboyoun ★ 1.6k
0
votes
1
reply
750
views
Reminder: Intermediate BioC Course 21-23 Jan 09
Sequencing Microarray genomes Sequencing Microarray genomes
15.3 years ago Patrick Aboyoun ★ 1.6k
0
votes
2
replies
642
views
comparing multiple individual genomes in bioc?
genomes genomes
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ★ 1.1k
0
votes
4
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1.5k
views
rtracklayer and UCSC
rtracklayer genomes rtracklayer genomes
updated 15.0 years ago by ▴ 620 • written 15.0 years ago by ★ 6.5k
0
votes
2
replies
1.1k
views
biomaRt access to ensemble genomes 11 fungi_mart_11
genomes genomes
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ★ 1.6k
0
votes
1
reply
840
views
about the annotate the new genome for geneplotter/genegraph
Annotation genomes Annotation genomes
updated 14.8 years ago by ▴ 140 • written 14.8 years ago by ▴ 10
0
votes
0
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1.0k
views
Ensembl mart release 56: Useful information
GO Anopheles gambiae Drosophila melanogaster genomes GO Anopheles gambiae genomes
14.6 years ago Rhoda Kinsella ▴ 660
0
votes
0
replies
899
views
Position for Computational Scientist at EMBL
Sequencing Genetics genomes Sequencing Genetics genomes
14.4 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
763
views
need output to contain probe x, y coordinates on array - AffyTiling
probe PROcess genomes probe PROcess genomes
14.4 years ago Ann Loraine ▴ 110
0
votes
0
replies
756
views
need output to contain probe x, y coordinates on array - AffyTiling
Microarray probe PROcess genomes Microarray probe PROcess genomes
14.4 years ago Charles Danko ▴ 40
0
votes
0
replies
1.3k
views
Computational Biology Positions at EMBL (Heidelberg)
Sequencing Genetics genomes Sequencing Genetics genomes
14.2 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
924
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ChIPpeakAnno Paper - Example Dataset not found
Transcription ChIPSeq Annotation chipseq genomes Transcription ChIPSeq Annotation chipseq
13.9 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.8 years ago by 16k • written 13.8 years ago by ▴ 30
0
votes
2
replies
2.0k
views
E. coli annotation to map?
biomaRt genomes biomaRt genomes
updated 13.7 years ago by ▴ 500 • written 13.7 years ago by ▴ 40
0
votes
1
reply
730
views
Human genomic sequences
genomes genomes
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 30
0
votes
2
replies
1.6k
views
a workflow of population genomic operations/analysis using bioconductor
Genetics genomes Genetics genomes
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ▴ 290
0
votes
3
replies
1.0k
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
genomes genomes
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 290
0
votes
0
replies
901
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
convert genomes convert genomes
13.4 years ago Sean Davis 21k
0
votes
0
replies
963
views
How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?
Alignment biomaRt genomes Alignment biomaRt genomes
13.4 years ago Noah Dowell ▴ 410
0
votes
8
replies
1.6k
views
Gene Lists and Genomes
GO genomes GO genomes
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 240
0
votes
4
replies
1.1k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ▴ 100
0
votes
1
reply
740
views
IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 12.9 years ago by ★ 11k • written 12.9 years ago by 16k
0
votes
4
replies
1.3k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 12.8 years ago by 16k • written 12.9 years ago by ▴ 100
0
votes
0
replies
1.7k
views
Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
12.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
931
views
Conference announcement: Omics and Personalised Health, EMBL Heidelberg, 16-18 February 2012
genomes genomes
12.6 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
943
views
the procedure to annotate assembled transcriptom
annotate genomes annotate genomes
updated 12.5 years ago by 21k • written 12.5 years ago by ★ 2.0k
0
votes
1
reply
818
views
Addition of Orangutan genome to BSgenomes
Genetics BSgenome BSgenome genomes Genetics BSgenome BSgenome genomes
updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ▴ 10
0
votes
1
reply
709
views
MEDIPS R package reference genomes
genomes MEDIPS genomes MEDIPS
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 220
0
votes
13
replies
2.3k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 30
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
votes
6
replies
1.5k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 12.1 years ago by ▴ 660 • written 12.2 years ago by 16k
0
votes
0
replies
1.3k
views
Job Announcement: Genome Informatics
Sequencing Genetics genomes Sequencing Genetics genomes
12.2 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
1.2k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.1 years ago by ★ 1.7k • written 12.1 years ago by ★ 6.8k
0
votes
1
reply
1.0k
views
Course: R / Bioconductor for High-Throughput Sequence Analysis
Annotation Cancer genomes Annotation Cancer genomes
12.1 years ago Martin Morgan 25k
0
votes
0
replies
1.3k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
12.1 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
922
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome BSgenome GenomicFeatures cycle genomes SNP Annotation BSgenome
updated 12.0 years ago by ★ 1.7k • written 12.0 years ago by ★ 6.8k
0
votes
0
replies
1.3k
views
[Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info …
Drosophila melanogaster TranscriptDb biomaRt GenomicFeatures genomes Drosophila melanogaster
11.9 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.5k
views
Gviz: Error plotting C.elegans ideogram
ideogram genomes Gviz ideogram genomes Gviz
11.9 years ago Michael Dondrup ▴ 550
50 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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