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goexpress
•
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9
votes
8
replies
3.9k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.2 years ago
Bogdan
▴ 670
2
votes
8
replies
1.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 18 months ago by
kevin.rue
▴ 350 • written 18 months ago by
grolo
• 0
6
votes
7
replies
3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.6 years ago
martin.hoelzer
▴ 20
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.2 years ago by
kevin.rue
▴ 350 • written 8.2 years ago by
martin.hoelzer
▴ 20
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
kcamnairb
▴ 10
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.3 years ago by
kevin.rue
▴ 350 • written 4.3 years ago by
atorson
• 0
5
votes
4
replies
1.6k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.3 years ago by
kevin.rue
▴ 350 • written 7.3 years ago by
mforde84
▴ 20
2
votes
4
replies
1.3k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.3 years ago
sina.zboron
• 0
0
votes
3
replies
3.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.0 years ago by
kevin.rue
▴ 350 • written 8.0 years ago by
Darya Vanichkina
▴ 120
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.6 years ago by
kevin.rue
▴ 350 • written 4.6 years ago by
Antonio Campos
• 0
0
votes
2
replies
995
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.7 years ago
rezashiralmohammad
• 0
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
17 months ago
Chruut
• 0
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
willj
▴ 30
0
votes
0
replies
449
views
GOexpress pvalue and gene sets
GOexpress
2.2 years ago
jms2520
▴ 10
14 results • Page
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Comment: deseq2 results
by
sajadahmad41454
• 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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ATpoint
★ 4.1k
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Michael Love
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