Bioconductor Goprofiles

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1.1k

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GO.db GOfuncR GO GOSim goProfiles

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by yeluo • 0

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3.6k

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goprofiles AnnotationForge Bimap GO

11.2 years ago artur ▴ 80

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GO goProfiles GO goProfiles

11.6 years ago Arnaud Mounier ▴ 40

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GO Organism goProfiles GO Organism goProfiles

12.3 years ago Marc Carlson ★ 7.2k

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1.9k

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goProfiles goProfiles

12.3 years ago Guest User ★ 13k

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 12.8 years ago by Marc Carlson ★ 7.2k • written 12.8 years ago by Jose M Garcia Manteiga ▴ 310

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GO goProfiles GO goProfiles

updated 13.1 years ago by Steve Lianoglou ★ 13k • written 13.1 years ago by Guest User ★ 13k

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GO goProfiles GO goProfiles

updated 15.4 years ago by Marc Carlson ★ 7.2k • written 15.4 years ago by Xiaohui Wu ▴ 280

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1.8k

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GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles

updated 15.4 years ago by James W. MacDonald 68k • written 15.4 years ago by Xiaohui Wu ▴ 280

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Category goProfiles Category goProfiles

15.5 years ago wei tie ▴ 30

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1.3k

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Annotation GO topGO goProfiles Annotation GO topGO goProfiles

16.2 years ago Johannes Hanson ▴ 30

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GO graph goProfiles GO graph goProfiles

16.5 years ago Jean-Pierre Desvignes ▴ 60

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goProfiles goProfiles

updated 16.5 years ago by Steve Lianoglou ★ 13k • written 16.5 years ago by Massimo Pinto ▴ 390

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GO mouse4302 goProfiles GO mouse4302 goProfiles

updated 17.5 years ago by Alex Sanchez ▴ 20 • written 17.5 years ago by Straubhaar, Juerg ▴ 300

14 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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