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goprofiles
•
reset
0
votes
1
reply
1.1k
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 3.0 years ago by
Basti
▴ 780 • written 3.0 years ago by
yeluo
• 0
3
votes
9
replies
3.6k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
11.1 years ago
artur
▴ 80
0
votes
0
replies
1.9k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
11.5 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.5k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
12.2 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.9k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
12.2 years ago
Guest User
★ 13k
0
votes
2
replies
1.4k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 12.7 years ago by
Marc Carlson
★ 7.2k • written 12.7 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.3k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Guest User
★ 13k
0
votes
2
replies
2.0k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 15.3 years ago by
Marc Carlson
★ 7.2k • written 15.3 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.7k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
986
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
15.4 years ago
wei tie
▴ 30
0
votes
0
replies
1.3k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
16.1 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
1.2k
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
16.3 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
2.4k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 16.4 years ago by
Steve Lianoglou
★ 13k • written 16.4 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.4k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 17.4 years ago by
Alex Sanchez
▴ 20 • written 17.4 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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