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grange
•
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0
votes
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716
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Error in Medips MEDIPS.CpGenrich()
software error
Grange
RangedData
4.9 years ago
mawusse.agbessi
• 0
2
votes
0
replies
963
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
5.2 years ago
rmash
▴ 20
0
votes
1
reply
743
views
Multi-sample Heatmap from GRange
GRange
updated 6.2 years ago by
James W. MacDonald
67k • written 6.2 years ago by
Danny
• 0
0
votes
3
replies
3.0k
views
Selecting columns form a list of grange objects
r
granges
grange
6.4 years ago
g.k
• 0
1
vote
3
replies
1.2k
views
GRange and bam files
bioconductor
Grange
6.7 years ago
Merlin
▴ 10
0
votes
1
reply
1.1k
views
Detect Sites with Minimum Gap in GRanges Object
R
genomicranges
granges
grange
6.8 years ago
g.k
• 0
1
vote
2
replies
1.9k
views
Detecting Overlaps within Grange Object
r
grange
granges
iranges
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
g.k
• 0
3
votes
4
replies
5.9k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange
genomicranges
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
endrebak85
▴ 40
1
vote
2
replies
2.7k
views
Extract GRanges for gene data frame
GRange
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
mdeea123
▴ 10
9
votes
21
replies
12k
views
annotate GRanges with upstream or downstream nearest gene
GRange
genomicranges
genomicfeatures
updated 9.1 years ago by
Ou, Jianhong
★ 1.3k • written 9.1 years ago by
tangming2005
▴ 200
0
votes
1
reply
1.2k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures
GRange
Rsamtools
updated 10.0 years ago by
Valerie Obenchain
★ 6.8k • written 10.0 years ago by
cidster12
• 0
4
votes
2
replies
1.4k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
10.2 years ago
Bogdan
▴ 670
12 results • Page
1 of 1
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Replies
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
by
James W. MacDonald
67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
franknappi14
• 0
I tried it and it's working properly.
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
ATpoint
★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts
by
kahunroleh
• 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Votes
Comment: Unused arguments error without used arguments in GSVA?
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
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