Showing : grange • reset
9
votes
21
replies
11k
views
annotate GRanges with upstream or downstream nearest gene
GRange genomicranges genomicfeatures
updated 8.3 years ago by ★ 1.3k • written 8.3 years ago by ▴ 190
3
votes
4
replies
5.2k
views
GenomicRanges: Take union of GRanges and keep metadata?
GRange genomicranges
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 40
0
votes
3
replies
2.4k
views
Selecting columns form a list of grange objects
r granges grange
5.6 years ago g.k • 0
1
vote
3
replies
950
views
GRange and bam files
bioconductor Grange
6.0 years ago Merlin ▴ 10
4
votes
2
replies
1.2k
views
about INCLUSIVE INTERSECTION of GRANGES
Grange
9.4 years ago Bogdan ▴ 670
1
vote
2
replies
2.3k
views
Extract GRanges for gene data frame
GRange
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 10
1
vote
2
replies
1.4k
views
Detecting Overlaps within Grange Object
r grange granges iranges
updated 6.1 years ago by ★ 11k • written 6.1 years ago by • 0
0
votes
1
reply
533
views
Error in Medips MEDIPS.CpGenrich()
software error Grange RangedData
4.2 years ago mawusse.agbessi • 0
0
votes
1
reply
1.0k
views
summarizeOverlaps on partial BAM file?
GenomicFeatures GRange Rsamtools
updated 9.2 years ago by ★ 6.8k • written 9.2 years ago by • 0
0
votes
1
reply
924
views
Detect Sites with Minimum Gap in GRanges Object
R genomicranges granges grange
6.0 years ago g.k • 0
0
votes
1
reply
598
views
Multi-sample Heatmap from GRange
GRange
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
2
votes
0
replies
786
views
SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges GenomicFeatures grange distanceToNearest R
4.5 years ago rmash ▴ 20
12 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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