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hg19
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reset
2
votes
2
replies
752
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Get gene symbols for a set of hg19 coordinates
annotation
hg19
9 months ago
pcantalupo
▴ 10
2
votes
3
replies
2.2k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb
hg19
ucsc
seqlevel
genomicfeatures
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
foehn
▴ 100
1
vote
3
replies
1.5k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
Identifying long stretches of Ns in hg19
bsgenome.hsapiens.ucsc.hg19
hg19
updated 7.3 years ago by
Mike Smith
★ 6.6k • written 7.3 years ago by
addyS
• 0
0
votes
0
replies
1.5k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.8 years ago
matthew.bashton
• 0
1
vote
4
replies
3.3k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 8.0 years ago by
maximilianh
▴ 10 • written 8.0 years ago by
metamaden
▴ 10
2
votes
4
replies
1.5k
views
BiomaRT inconsistency for PDGFRA, returns FIP1L1 instead
biomart
hg19
8.4 years ago
Stephane Plaisance | VIB |
▴ 60
0
votes
1
reply
1.4k
views
BSgenome.Hsapiens.UCSC.hg19 Sequence missing
bsgenome
hg19
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Lakshmanan Iyer
▴ 250
8 results • Page
1 of 1
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Replies
Answer: Differential expression of proteins using somascan data
by
James W. MacDonald
68k
Providing a bunch of code but not the output is not very helpful. Ideally you would just provide ``` nrow(design) ncol(protein_data_lo…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
Elijah
• 0
Hi Snow, Thanks for your comment! I didn't do any normalization of the counts prior to the DEXseq pipeline - I've only been using the inte…
Comment: Using tximport for kallisto aligned TOIL data
by
Nicholas
• 0
Sorry, I misspoke. The data was from the TOIL project and was aligned using kallisto. It was accessed from the UCSC XENA browser. I updated…
Comment: Using tximport for kallisto aligned recount2 data
by
ATpoint
★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
by
Yao Lipu
• 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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