Bioconductor Hg19

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annotation hg19

5 months ago pcantalupo ▴ 10

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2.0k

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genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by foehn ▴ 100

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hg19 liftover matrixeqtl DMRcate

updated 5.4 years ago by James W. MacDonald 67k • written 5.4 years ago by yoursbassanio ▴ 10

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1.1k

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.0 years ago by Mike Smith ★ 6.6k • written 7.0 years ago by addyS • 0

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omiccircos bug hg19 hg18 data

7.5 years ago matthew.bashton • 0

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ucsc ucsctrack ggbio Gviz hg19

updated 7.7 years ago by maximilianh ▴ 10 • written 7.7 years ago by metamaden ▴ 10

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1.4k

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biomart hg19

8.1 years ago Stephane Plaisance | VIB | ▴ 60

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1.3k

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bsgenome hg19

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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