Bioconductor Hg19

Showing : hg19 • reset

votes

replies

1.1k

views

annotation hg19

17 months ago pcantalupo ▴ 10

votes

replies

2.4k

views

genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 5.6 years ago by James W. MacDonald 68k • written 5.6 years ago by foehn ▴ 100

vote

replies

1.7k

views

hg19 liftover matrixeqtl DMRcate

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by yoursbassanio ▴ 10

votes

1.3k

views

bsgenome.hsapiens.ucsc.hg19 hg19

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by addyS • 0

votes

replies

1.6k

views

omiccircos bug hg19 hg18 data

8.5 years ago matthew.bashton • 0

vote

replies

3.6k

views

ucsc ucsctrack ggbio Gviz hg19

updated 8.7 years ago by maximilianh ▴ 10 • written 8.7 years ago by metamaden ▴ 10

votes

replies

1.6k

views

biomart hg19

9.1 years ago Stephane Plaisance | VIB | ▴ 60

votes

1.5k

views

bsgenome hg19

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

Recent ...

Replies

Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0

Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …

Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All