Bioconductor Hg19

Showing : hg19 • reset

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annotation hg19

15 months ago pcantalupo ▴ 10

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2.4k

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genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by foehn ▴ 100

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hg19 liftover matrixeqtl DMRcate

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by yoursbassanio ▴ 10

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1.3k

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.9 years ago by Mike Smith ★ 6.6k • written 7.9 years ago by addyS • 0

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1.6k

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omiccircos bug hg19 hg18 data

8.4 years ago matthew.bashton • 0

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3.5k

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ucsc ucsctrack ggbio Gviz hg19

updated 8.6 years ago by maximilianh ▴ 10 • written 8.6 years ago by metamaden ▴ 10

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1.6k

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biomart hg19

8.9 years ago Stephane Plaisance | VIB | ▴ 60

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1.5k

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bsgenome hg19

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

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Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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