Bioconductor Hg38

Showing : hg38 • reset

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362

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SeqSQC hg38

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by isml2688 • 0

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692

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hg38 genicannotations

updated 2.6 years ago by James W. MacDonald 65k • written 2.6 years ago by bundo • 0

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1.0k

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Annotation variation HG38

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Emanuele • 0

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983

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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2.4k

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edaseq normalization hg38 biomart org.db

updated 6.4 years ago by davide risso ▴ 950 • written 6.4 years ago by mark.ebbert • 0

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1.5k

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featurecounts hg38

6.9 years ago raf4 ▴ 20

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2.6k

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salmon hg38 tximport tx2gene.csv

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by seb.boegel • 0

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2.2k

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rsubread ncbi GRCh38 hg38

updated 7.5 years ago by Wei Shi ★ 3.6k • written 7.5 years ago by jan.soderman • 0

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2.1k

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bsgenome hg38 r version 3.1.2

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by kylvalda • 0

9 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0