Showing : hgu133plus2 • reset
5
votes
4
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3.3k
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
6.4 years ago rahil ▴ 30
4
votes
2
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2.6k
views
error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 14.7 years ago by ▴ 400 • written 14.7 years ago by ▴ 340
2
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2
replies
1.3k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.4 years ago by 65k • written 9.4 years ago by • 0
2
votes
1
reply
1.9k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.3 years ago by ▴ 20 • written 11.2 years ago by ▴ 340
1
vote
4
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2.2k
views
hgu133plus2cdf cant download
normalization hgu133plus2
6.6 years ago marion.ryan • 0
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
0
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1
reply
1.3k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.1 years ago by 65k • written 12.1 years ago by ▴ 240
0
votes
1
reply
1.0k
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 hgu133plus2
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 140
0
votes
1
reply
831
views
justRMA() execution problems
hgu133plus2 hgu133plus2
updated 20.3 years ago by 65k • written 20.3 years ago by ▴ 40
0
votes
0
replies
785
views
missing MAP locations for hgu133plus2 annotation
Genetics Annotation hgu133plus2 Genetics Annotation hgu133plus2
20.2 years ago Srikanth ▴ 40
0
votes
0
replies
697
views
Questions related to processing large dataset in batches
Microarray Normalization Cancer hgu133plus2 probe affy gcrma PROcess Microarray Cancer
19.9 years ago James W. MacDonald 65k
0
votes
5
replies
1.4k
views
Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 430
0
votes
3
replies
1.1k
views
equivalent probes between microarray platforms
hgu133plus2 hu6800 hgu133plus2 hu6800
updated 19.6 years ago by ▴ 10 • written 19.6 years ago by ▴ 140
0
votes
1
reply
14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 10.4 years ago by ★ 1.6k • written 10.4 years ago by ★ 13k
0
votes
0
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1.0k
views
PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.8 years ago Iain Gallagher ▴ 930
0
votes
0
replies
843
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
19.1 years ago Gerard Tromp ▴ 10
0
votes
4
replies
1.3k
views
Problems with hgu133plus2
Annotation hgu133plus2 Annotation hgu133plus2
19.2 years ago Vitalina Komashko ▴ 30
0
votes
7
replies
1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.1 years ago by ▴ 170 • written 19.1 years ago by ▴ 430
0
votes
1
reply
1.1k
views
error with plot in simpleaffy
hgu133plus2 probe simpleaffy hgu133plus2 probe simpleaffy
19.0 years ago Larry La Pointe ▴ 60
0
votes
4
replies
919
views
Annotation packages: Which Unigene Release?
hgu133plus2 hgu133plus2
updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ▴ 310
0
votes
1
reply
1000
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
19.0 years ago Yanqin Yang ▴ 250
0
votes
5
replies
1.0k
views
Problems with homology packages
hgu133plus2 hgu133plus2
18.9 years ago Bosotti, Roberta [Nervianoms] ▴ 120
0
votes
2
replies
712
views
adding annotation to exprSet
Annotation hgu133plus2 annotate affy limma Annotation hgu133plus2 annotate affy limma
18.8 years ago Andreas Zankl ▴ 80
0
votes
0
replies
751
views
want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
18.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
767
views
hgu133plus2cdf
hgu133plus2 cdf hgu133plus2 cdf
18.3 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
769
views
annotation hgu133plus2 problem,
hgu133plus2 hgu133plus2
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 360
0
votes
2
replies
1.5k
views
Package installation problem...
hgu133plus2 cdf hgu133plus2 cdf
updated 18.2 years ago by 65k • written 18.2 years ago by ▴ 10
0
votes
2
replies
957
views
annotation
hgu133plus2 mgu74av2 annotate hgu133plus2 mgu74av2 annotate
updated 18.2 years ago by ▴ 300 • written 18.2 years ago by ▴ 320
0
votes
3
replies
2.6k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
18.1 years ago Wu, Xiwei ▴ 350
0
votes
0
replies
1.2k
views
topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
11.2 years ago Kishor Tappita ▴ 340
0
votes
2
replies
995
views
vector allocation error
hgu133plus2 gcrma hgu133plus2 gcrma
updated 17.9 years ago by ▴ 60 • written 17.9 years ago by ▴ 50
0
votes
0
replies
610
views
alternative CDF
hgu133a hgu133plus2 cdf hgu133a hgu133plus2 cdf
18.0 years ago Tarca, Adi ▴ 570
0
votes
1
reply
542
views
memory problem
hgu133plus2 PROcess hgu133plus2 PROcess
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ▴ 320
0
votes
2
replies
1.0k
views
Question on AffyBatch
hgu133plus2 probe hgu133plus2 probe
updated 17.7 years ago by ★ 13k • written 17.7 years ago by ▴ 100
0
votes
1
reply
638
views
Question on read.probematix
hgu133plus2 hgu133plus2
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 100
0
votes
0
replies
673
views
Does anyone have a recent annotation for hgu133plus2 ??
Annotation hgu133plus2 AnnBuilder Annotation hgu133plus2 AnnBuilder
17.3 years ago Marco Zucchelli ▴ 10
0
votes
0
replies
738
views
hgu133plus2 normalization
Microarray hgu133plus2 PROcess Microarray hgu133plus2 PROcess
17.1 years ago Bin Zheng ▴ 10
0
votes
2
replies
1.1k
views
Questions about gene identifiers and probesets regulation
Microarray hgu133plus2 limma Microarray hgu133plus2 limma
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Question about inconsistent gene expression
Microarray Cancer hgu133plus2 probe affy limma gcrma Microarray Cancer hgu133plus2 probe
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 40
0
votes
2
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1.1k
views
RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 16.6 years ago by ▴ 190 • written 16.7 years ago by ▴ 10
0
votes
0
replies
818
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
16.6 years ago Martin Morgan 25k
0
votes
0
replies
735
views
Affymetrix quality control metrics with simpleaffy
GO hgu133plus2 affy GO hgu133plus2 affy
16.6 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
0
votes
1
reply
803
views
Mapping Affy probes to OperonID or ensemblID
Cancer hgu133plus2 Cancer hgu133plus2
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 140
0
votes
3
replies
2.7k
views
How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2 hgu133plus2
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 600
0
votes
3
replies
1.2k
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
15.8 years ago Boel Brynedal ▴ 200
0
votes
0
replies
828
views
dev2bitmap error, 'gs' cannot be found
hgu133plus2 Category hgu133plus2 Category
15.8 years ago Boel Brynedal ▴ 200
0
votes
0
replies
672
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
15.8 years ago Boel Brynedal ▴ 200
0
votes
0
replies
685
views
problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
18.0 years ago MARIA STALTERI ▴ 160
50 results • Page 1 of 1
Recent ...
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Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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