Showing : hgu133plus2 • reset
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
14.5 years ago Valerie Obenchain ★ 6.8k
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1.2k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
14.5 years ago Iain Gallagher ▴ 930
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1
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1.4k
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rtracklayer - browserSession error
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 14.7 years ago by ★ 11k • written 14.7 years ago by ★ 1.1k
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limma topTable annotation
GO hgu133plus2 affy limma convert Category GO hgu133plus2 affy limma convert Category
updated 14.9 years ago by ▴ 130 • written 14.9 years ago by 53k
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limma topTable annotation
GO hgu133plus2 affy limma convert GO hgu133plus2 affy limma convert
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 130
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1
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1.3k
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Insert entrez gene ID and gene symbol and name on TopTable for hugene1.0st arrays
hgu133plus2 hgu133plus2
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 200
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quick question about romer results
hgu133plus2 limma hgu133plus2 limma
updated 15.1 years ago by ▴ 190 • written 15.1 years ago by ▴ 930
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1.0k
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arrayQualityMetrics
GO hgu133plus2 arrayQualityMetrics GO hgu133plus2 arrayQualityMetrics
updated 15.2 years ago by ★ 8.2k • written 15.2 years ago by ▴ 510
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1.6k
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Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 240
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Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 170
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3
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1.5k
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problem about hgu133plus2 annotation
hgu133plus2 hgu133plus2
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 10
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1.6k
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GSEABase and Broad Inst Sets
Annotation hgu133plus2 hgu95av2 GSEABase Annotation hgu133plus2 hgu95av2 GSEABase
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 930
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Problem with chromLoc object.
Organism hgu133plus2 reb Organism hgu133plus2 reb
updated 15.6 years ago by ▴ 210 • written 15.6 years ago by ▴ 20
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1.1k
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vennSelect problem with hgu133plus package
hgu133plus2 hgu133plus2
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 170
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1.2k
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rtracklayer 1.6: invalid class "ucscCart" object
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ★ 1.1k
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load failed for 'Rlibstree'
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ★ 1.1k
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1.5k
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Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
updated 15.9 years ago by ▴ 570 • written 15.9 years ago by ▴ 400
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Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
15.9 years ago Tony Chiang ▴ 570
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affylmGUI MA-plot using Gene Symbols
Microarray Annotation hgu133plus2 probe affy affylmGUI Microarray Annotation hgu133plus2
16.0 years ago Chuming Chen ▴ 140
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4
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2.4k
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hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 16.1 years ago by ▴ 630 • written 16.1 years ago by ▴ 60
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2
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1.6k
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probe to entrezID mapping with aafLocusLink
GO hgu133plus2 probe annaffy convert GO hgu133plus2 probe annaffy convert
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 10
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3
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2.2k
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Problem with KEGGgraph
Organism hgu133plus2 KEGGgraph Organism hgu133plus2 KEGGgraph
updated 16.3 years ago by ▴ 570 • written 16.3 years ago by ▴ 270
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problem with nsFilter and hthgu133a format eset
hgu133plus2 hgu133plus2
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 270
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error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 16.3 years ago by ▴ 400 • written 16.3 years ago by ▴ 340
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 340
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Error while trying to use Genefilter
hgu133plus2 hgu133plus2
updated 16.3 years ago by ★ 2.0k • written 16.3 years ago by ▴ 200
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Different gcrma output values after upgrade BioC 2.0 -> 2.4
Microarray Normalization GO hgu133plus2 rgu34a probe gcrma Microarray Normalization GO
16.4 years ago Rullmann, J.A.C. Ton ▴ 40
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Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 40
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1.1k
views
no 'strands' method on GenomicData in 2.5?
hgu133plus2 rtracklayer IRanges hgu133plus2 rtracklayer IRanges
updated 16.5 years ago by ▴ 620 • written 16.5 years ago by ★ 1.1k
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2
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2.0k
views
problem with 2.0 cdf
hgu133plus2 cdf hgu133plus2 cdf
updated 16.5 years ago by ▴ 450 • written 16.5 years ago by ▴ 420
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3
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1.2k
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Error in summary(hyperGtest)
Annotation GO hgu133plus2 Annotation GO hgu133plus2
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 270
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Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
16.5 years ago Alex Sanchez ▴ 90
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3
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Problem with hgu133plus2.db package
GO hgu133plus2 GO hgu133plus2
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 50
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725
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Installation of a custom cdf hs133phsentrezgcdf
Cancer hgu133plus2 cdf Cancer hgu133plus2 cdf
16.6 years ago Martin Morgan 25k
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1
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1.2k
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Installation of a custom cdf hs133phsentrezgcdf
hgu133plus2 cdf hgu133plus2 cdf
updated 16.6 years ago by ▴ 400 • written 16.6 years ago by ▴ 40
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Affy output
Annotation GO hgu133a2 hgu133plus2 cdf Annotation GO hgu133a2 hgu133plus2 cdf
16.7 years ago Sarmah, Chintanu Kumar ▴ 70
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Error using summary method on GOHyperGResult object
Annotation GO hgu133plus2 Annotation GO hgu133plus2
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 350
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3
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Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 100
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how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 350
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KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 170
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mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
16.7 years ago James W. MacDonald 68k
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9
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2.2k
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Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 30
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2
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1.5k
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PieGlyph - labels do not show
hgu133plus2 Rgraphviz hgu133plus2 Rgraphviz
16.8 years ago Sim, Fraser ▴ 350
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4
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1.8k
views
possible bug in getBM{biomaRt}
hgu133plus2 hgu133plus2
updated 16.8 years ago by ▴ 660 • written 16.8 years ago by ▴ 30
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1.2k
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Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
16.9 years ago ramesh aathe ▴ 10
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Error in HyperGTest with GOHyperGParams class
Annotation GO hgu133a2 hgu133plus2 Annotation GO hgu133a2 hgu133plus2
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 510
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1.7k
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GSEABase GOCollection wrong ontology
Annotation GO hgu133plus2 affy GSEABase Annotation GO hgu133plus2 affy GSEABase
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 330
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1.5k
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GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 180
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1.1k
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Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 moe430a hgu133plus2 moe430a
17.0 years ago MARIA STALTERI ▴ 160
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1.3k
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 hgu133plus2
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 140
157 results • Page 2 of 4
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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