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Showing :
ideogram
•
reset
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
0
votes
5
replies
1.7k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 15.5 years ago by
Camper Chih-Wei Liu
▴ 40 • written 15.5 years ago by
Michael Lawrence
▴ 620
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
0
votes
3
replies
2.1k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
6.6 years ago
wd
▴ 30
0
votes
3
replies
2.0k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 15.5 years ago by
Steve Lianoglou
★ 13k • written 15.5 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
3
replies
760
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 7 months ago by
Robert Ivanek
▴ 730 • written 7 months ago by
Michael
• 0
0
votes
3
replies
1.3k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 9.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.1 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.9k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 10.8 years ago by
Steve Lianoglou
★ 13k • written 10.8 years ago by
Siddharth Sethi
▴ 10
0
votes
2
replies
1.5k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 15.5 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 15.5 years ago by
Daren Tan
▴ 190
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
6.8 years ago
Didi
▴ 10
4
votes
2
replies
2.3k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 8.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
I-Hsuan Lin
▴ 10
0
votes
2
replies
1.4k
views
Trouble with Ideogram Plots
Gviz
ideogram
8.8 years ago
rowlandsd
• 0
0
votes
2
replies
1.4k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 10.5 years ago by
Tengfei Yin
▴ 490 • written 10.5 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 10.4 years ago by
Leonardo Collado Torres
★ 1.0k • written 10.4 years ago by
Tengfei Yin
▴ 490
0
votes
1
reply
805
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 17.5 years ago by
Oosting, J. PATH
▴ 550 • written 17.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.5k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
11.9 years ago
Michael Dondrup
▴ 550
0
votes
1
reply
1.3k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 12.2 years ago by
Joern Toedling
▴ 50 • written 12.2 years ago by
Iain Gallagher
▴ 930
0
votes
1
reply
976
views
plotting both
ideogram
ideogram
updated 10.3 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 9.7 years ago by
Tengfei Yin
▴ 490 • written 9.8 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.4k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 8.6 years ago by
Robert Ivanek
▴ 730 • written 8.7 years ago by
Doris
• 0
0
votes
0
replies
772
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
18.3 years ago
James W. MacDonald
65k
0
votes
0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
11.2 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.1k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
7.4 years ago
sabrina.elias
• 0
0
votes
0
replies
776
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
11.3 years ago
Abhishek Pratap
▴ 410
0
votes
0
replies
1.6k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
11.9 years ago
Murat Tasan
▴ 10
0
votes
0
replies
992
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
12.8 years ago
Pete Shepard
▴ 240
0
votes
0
replies
868
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
5.4 years ago
gpwhiz
▴ 10
1
vote
0
replies
1.3k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
10.7 years ago
Martin Rijlaarsdam
▴ 190
28 results • Page
1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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