Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ihw
•
reset
2
votes
4
replies
1.6k
views
Filtering after DESeq
DESeq2
IHW
written 5 months ago by
caroline.zanchi
▴ 10
0
votes
3
replies
1.2k
views
IHW for multiple regression
IHW
updated 2.7 years ago by
Wolfgang Huber
★ 13k • written 2.9 years ago by
Tyson
• 0
1
vote
3
replies
1.4k
views
Why are padj results different for BetaPrior = TRUE vs lfcShrink()?
IHW
lfcShrink
DESeq2
3.5 years ago
Ali Barry
▴ 40
3
votes
2
replies
1.7k
views
Ashr and IHW
Ashr
LFCShrinkage
IHW
DESeq2
3.8 years ago
Bex
• 0
3
votes
3
replies
1.4k
views
IHW: retain annotation columns in data when running `ihw(pvalue ~ covariate, data = ...)`
ihw
independent hypothesis weighting
5.5 years ago
david.laehnemann
▴ 10
2
votes
4
replies
1.6k
views
DESeq2 - problem with inferring correct results.
deseq2
rnaseq
sva
fdrtool
ihw
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
rihards.saksis
• 0
0
votes
2
replies
1.2k
views
DESeq2 and data.table impacted by IHW and lpsymphony
lpsymphony
IHW
updated 6.0 years ago by
Mike Smith
★ 6.6k • written 6.0 years ago by
mattjdowle
• 0
1
vote
2
replies
1.3k
views
Does DESeq2 need to correct for overlapping regions?
deseq2
ihw
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
schwarzl
• 0
1
vote
2
replies
1.4k
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 6.4 years ago by
Wolfgang Huber
★ 13k • written 6.4 years ago by
xiaotong.yao23
▴ 10
2
votes
3
replies
1.6k
views
lpsymphony will not build
ihw
6.5 years ago
caldodge
▴ 20
0
votes
2
replies
1.1k
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
guidobarzaghi
▴ 20
5
votes
6
replies
2.1k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
guidobarzaghi
▴ 20
8
votes
2
replies
1.4k
views
Does IHW use the supplied alpha for the correction calculations?
IHW
deseq2
updated 6.7 years ago by
Nikos Ignatiadis
▴ 180 • written 6.7 years ago by
k.vitting.seerup
▴ 120
1
vote
4
replies
1.8k
views
IHW multiple testing correction
IHW
multiple testing correction
covariate distribution
updated 6.9 years ago by
Wolfgang Huber
★ 13k • written 6.9 years ago by
lara.h.urban
• 0
1
vote
3
replies
1.9k
views
IHW and correlated covariates
ihw
8.9 years ago • updated 4.3 years ago
Michael Love
43k
0
votes
6
replies
2.1k
views
Defining subsets for FDR correction
fdr
deseq2
ihw
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
sven.schenk
▴ 30
1
vote
3
replies
1.9k
views
Libgomp error in IHW
ihw
updated 7.6 years ago by
vladislav.kim
▴ 10 • written 7.6 years ago by
Kipper Fletez-Brant
▴ 150
2
votes
2
replies
1.8k
views
how to specify the number of cores used by IHW
IHW
lpsymphony
updated 8.1 years ago by
vladislav.kim
▴ 10 • written 8.1 years ago by
Charlotte Soneson
▴ 170
5
votes
1
reply
1.8k
views
IHWpaper: choice of `nbins=4` in `proteomics_example_analysis.R`
ihw
updated 8.4 years ago by
Nikos Ignatiadis
▴ 180 • written 8.4 years ago by
paul.johnston
▴ 10
1
vote
4
replies
2.1k
views
IHW Package for R 3.2.5
deseq2
ihw
8.5 years ago
bekah
▴ 40
1
vote
2
replies
2.5k
views
How to use 'IHW' package to filter genes?
ihw
deseq2
edger
limma voom
updated 8.7 years ago by
Bernd Klaus
▴ 610 • written 8.7 years ago by
tofukaj
• 0
10
votes
2
replies
1.7k
views
Possible to incorporate the sign or direction of an effect in the IHW covariate?
IHW
updated 9.5 years ago by
Nikos Ignatiadis
▴ 180 • written 9.5 years ago by
dhibar
▴ 60
22 results • Page
1 of 1
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Gordon Smyth
53k
Popular Question
to
dan.gatti
• 0
Popular Question
to
shepherl
4.2k
Popular Question
to
Steve Lianoglou
★ 13k
Locations
• All
WEHI, Melbourne, Australia,
34 minutes ago
WEHI, Melbourne, Australia,
39 minutes ago
The city by the bay,
1 hour ago
Barcelona, Spain,
3 hours ago
Pittsburgh, United States,
4 hours ago
Traffic: 558 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6