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indel
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2
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3
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1.2k
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PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 6.9 years ago by
markus.riester
▴ 130 • written 6.9 years ago by
pathkim
• 0
1
vote
2
replies
1.1k
views
Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
addyS
• 0
0
votes
1
reply
876
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
oliwindram
▴ 10
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
1
vote
0
replies
1.3k
views
Genome editing analysis with Illumina sequencing
indel
sequencing
alignment
9.0 years ago
Merienne Nicolas
▴ 120
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
daniel.silvestre
▴ 100
6
votes
11
replies
3.0k
views
Comparing read sequence back to reference sequence
bam
indel
genomicalignments
biostrings
updated 9.5 years ago by
Nathaniel Hayden
▴ 180 • written 9.5 years ago by
Stefanie Tauber
▴ 40
7 results • Page
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Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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