Showing : keggsoap • reset
0
votes
1
reply
930
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.5 years ago doctor.dee005 • 0
1
vote
5
replies
2.3k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 660
1
vote
16
replies
2.2k
views
error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 420
0
votes
0
replies
1.2k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.8 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
901
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.8 years ago by ★ 8.2k • written 11.8 years ago by ▴ 120
0
votes
2
replies
1.1k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 30
0
votes
5
replies
1.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 110
0
votes
1
reply
1.4k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.7 years ago by ▴ 830 • written 12.7 years ago by ▴ 20
0
votes
0
replies
1.1k
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.7 years ago Voke AO ▴ 760
0
votes
0
replies
1.0k
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.8 years ago January Weiner ▴ 240
0
votes
2
replies
1.5k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 230
0
votes
1
reply
872
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 110
0
votes
1
reply
1.2k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 70
0
votes
1
reply
917
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 13k
0
votes
2
replies
1.1k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ▴ 140
0
votes
0
replies
888
views
SSOAP functions
KEGGSOAP KEGGSOAP
13.5 years ago Michael Gormley ▴ 60
0
votes
2
replies
3.6k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 340
0
votes
1
reply
1.6k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 70
0
votes
2
replies
1.1k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ★ 1.9k
0
votes
0
replies
1.0k
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
15.3 years ago Glazko, Galina ▴ 350
0
votes
0
replies
1.0k
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
15.4 years ago Paolo Sonego ▴ 140
0
votes
3
replies
1.4k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.5 years ago by ▴ 400 • written 15.5 years ago by ▴ 30
0
votes
0
replies
851
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.5 years ago Daniel Brewer ★ 1.9k
0
votes
4
replies
1.3k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 350
0
votes
2
replies
1.5k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 140
0
votes
3
replies
1.5k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 270
0
votes
3
replies
1.4k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.6 years ago by ▴ 140 • written 15.6 years ago by ▴ 120
0
votes
0
replies
1.1k
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.6 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
888
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
1.1k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 17.2 years ago by ★ 2.9k • written 17.2 years ago by ▴ 30
0
votes
3
replies
1.0k
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.7 years ago by ★ 1.7k • written 17.7 years ago by ▴ 40
0
votes
7
replies
1.5k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.0 years ago by ▴ 870 • written 18.0 years ago by ★ 6.0k
0
votes
0
replies
876
views
KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
18.0 years ago Nianhua Li ▴ 870
0
votes
0
replies
1.0k
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
18.0 years ago ALAN SMITH ▴ 40
0
votes
2
replies
1.2k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.0 years ago by ▴ 870 • written 18.0 years ago by ▴ 40
0
votes
0
replies
783
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.6 years ago michael watson IAH-C ★ 3.4k
0
votes
12
replies
2.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 30
0
votes
0
replies
1.0k
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
19.1 years ago Kimpel, Mark W ▴ 890
0
votes
1
reply
1.3k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 10
0
votes
0
replies
723
views
mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.8 years ago Yi-Xiong Sean Zhou ▴ 50
0
votes
0
replies
1.1k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.8 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
971
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.8 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.4k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.9 years ago by 21k • written 19.9 years ago by ▴ 60
43 results • Page 1 of 1
Recent ...
Replies
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards • All
Teacher to Gordon Smyth 51k
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to shepherl 4.1k
Supporter to Paul Harrison ▴ 100
Popular Question to Mikhail Dozmorov ▴ 30
Locations • All
France, 3 minutes ago
WEHI, Melbourne, Australia, 21 minutes ago
United States, 1 hour ago
United States, 1 hour ago
EMBL Heidelberg, 1 hour ago
Traffic: 561 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6