Showing : keggsoap • reset
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KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
7.8 years ago doctor.dee005 • 0
1
vote
5
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3.5k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 12.6 years ago by ★ 1.6k • written 12.6 years ago by ▴ 680
1
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16
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2.8k
views
error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 420
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1.5k
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KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
13.1 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.1k
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 120
0
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2
replies
1.4k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 30
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5
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1.6k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 14.0 years ago by ▴ 20 • written 14.0 years ago by ▴ 110
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1
reply
1.7k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 14.0 years ago by ▴ 830 • written 14.0 years ago by ▴ 20
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1.2k
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
14.0 years ago Voke AO ▴ 760
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0
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1.2k
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
14.1 years ago January Weiner ▴ 240
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2
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1.8k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 230
0
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1
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1.0k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 110
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1
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1.6k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 70
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1
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1.1k
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KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ★ 13k
0
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2
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1.3k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 14.3 years ago by ★ 8.2k • written 14.3 years ago by ▴ 140
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0
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1.0k
views
SSOAP functions
KEGGSOAP KEGGSOAP
14.8 years ago Michael Gormley ▴ 60
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2
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4.0k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 340
0
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1
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1.9k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 16.0 years ago by ★ 7.2k • written 16.0 years ago by ▴ 80
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2
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1.3k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ★ 1.9k
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0
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1.2k
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
16.5 years ago Glazko, Galina ▴ 350
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0
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1.2k
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
16.6 years ago Paolo Sonego ▴ 140
0
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3
replies
1.8k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 16.8 years ago by ▴ 400 • written 16.8 years ago by ▴ 30
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0
replies
1.0k
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
16.8 years ago Daniel Brewer ★ 1.9k
0
votes
4
replies
1.5k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 16.8 years ago by 6.7k • written 16.8 years ago by ▴ 350
0
votes
2
replies
1.8k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 140
0
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3
replies
1.8k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 270
0
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3
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1.8k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 16.9 years ago by ▴ 140 • written 16.9 years ago by ▴ 120
0
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0
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1.3k
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
16.9 years ago michael watson IAH-C ★ 3.4k
0
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1
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1.1k
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 16.9 years ago by ★ 7.2k • written 16.9 years ago by ★ 1.9k
0
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1
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1.4k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 18.5 years ago by ★ 2.9k • written 18.5 years ago by ▴ 30
0
votes
3
replies
1.3k
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 19.0 years ago by ★ 1.7k • written 19.0 years ago by ▴ 40
0
votes
7
replies
1.9k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 19.2 years ago by ▴ 870 • written 19.3 years ago by ★ 6.0k
0
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0
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1.1k
views
KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
19.3 years ago Nianhua Li ▴ 870
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0
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1.3k
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
19.3 years ago ALAN SMITH ▴ 40
0
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2
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1.5k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 19.3 years ago by ▴ 870 • written 19.3 years ago by ▴ 40
0
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0
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954
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
19.9 years ago michael watson IAH-C ★ 3.4k
0
votes
12
replies
3.0k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 30
0
votes
0
replies
1.2k
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
20.4 years ago Kimpel, Mark W ▴ 890
0
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1
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1.6k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 21.1 years ago by ★ 7.4k • written 21.1 years ago by ▴ 10
0
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0
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863
views
mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
21.1 years ago Yi-Xiong Sean Zhou ▴ 50
0
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0
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1.3k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
21.1 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.2k
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
21.1 years ago michael watson IAH-C ★ 3.4k
0
votes
2
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1.6k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 21.2 years ago by 21k • written 21.2 years ago by ▴ 60
43 results • Page 1 of 1
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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