Showing : keggsoap • reset
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About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 660
1
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16
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2.1k
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error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 420
0
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0
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1.0k
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KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.4 years ago michael watson IAH-C ★ 3.4k
0
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0
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653
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mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.4 years ago Yi-Xiong Sean Zhou ▴ 50
0
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1
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1.2k
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Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 10
0
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0
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problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.6 years ago Kimpel, Mark W ▴ 890
0
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12
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2.1k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 30
0
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0
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687
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.2 years ago michael watson IAH-C ★ 3.4k
0
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2
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1.1k
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help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.5 years ago by ▴ 870 • written 17.5 years ago by ▴ 40
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7
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1.3k
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KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.5 years ago by ▴ 870 • written 17.5 years ago by ★ 6.0k
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0
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921
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KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
17.5 years ago ALAN SMITH ▴ 40
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0
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796
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KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
17.5 years ago Nianhua Li ▴ 870
0
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3
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932
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libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.3 years ago by ★ 1.7k • written 17.3 years ago by ▴ 40
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1
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1.0k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.8 years ago by ★ 2.9k • written 16.8 years ago by ▴ 30
0
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3
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1.2k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.1 years ago by ▴ 140 • written 15.1 years ago by ▴ 120
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0
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930
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Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.1 years ago michael watson IAH-C ★ 3.4k
0
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1
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794
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KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ★ 1.9k
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3
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1.4k
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building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 270
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2
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1.4k
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KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 140
0
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4
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1.2k
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KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.1 years ago by 6.7k • written 15.1 years ago by ▴ 350
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0
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783
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KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.0 years ago Daniel Brewer ★ 1.9k
0
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3
replies
1.3k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.0 years ago by ▴ 400 • written 15.0 years ago by ▴ 30
0
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0
replies
951
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
14.9 years ago Paolo Sonego ▴ 140
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0
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968
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KEGGSOAP package
KEGGSOAP KEGGSOAP
14.8 years ago Glazko, Galina ▴ 350
0
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2
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1.0k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ★ 1.9k
0
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1
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1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ▴ 70
0
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2
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3.4k
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GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 340
0
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0
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818
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SSOAP functions
KEGGSOAP KEGGSOAP
13.0 years ago Michael Gormley ▴ 60
0
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2
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1.0k
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Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 140
0
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1
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843
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ★ 13k
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1
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1.1k
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KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 70
0
votes
1
reply
801
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 110
0
votes
2
replies
1.4k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 230
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votes
0
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965
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.3 years ago January Weiner ▴ 240
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0
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957
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.2 years ago Voke AO ▴ 760
0
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5
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1.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 110
0
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1
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1.3k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.2 years ago by ▴ 830 • written 12.2 years ago by ▴ 20
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2
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1.0k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 11.7 years ago by ★ 7.2k • written 11.8 years ago by ▴ 30
0
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1
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834
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.4 years ago by ★ 8.2k • written 11.4 years ago by ▴ 120
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0
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1.1k
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KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.4 years ago Dan Tenenbaum ★ 8.2k
0
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2
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1.3k
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pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 60
0
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1
reply
838
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.0 years ago doctor.dee005 • 0
0
votes
2
replies
868
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.4 years ago michael watson IAH-C ★ 3.4k
43 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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