Bioconductor Lfc

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2.1k

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deseq2 LFC LRT

written 6.5 years ago by sally.badawi • 0

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1.2k

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GLM prior DESeq LFC

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by stew • 0

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1.6k

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RNAseq LFC DEseq

4.3 years ago ayy2110 • 0

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2.3k

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deseq2 lfc betaprior

updated 2.8 years ago by Michael Love 43k • written 6.7 years ago by Mariaxi • 0

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15k

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deseq2 lfc coef contrast

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by Anke Busch ▴ 10

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3.4k

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limma microarray DEGs p values lfc

8.2 years ago rkp • 0

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22k

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deseq2 deseq lfc lfcse standard error

updated 8.4 years ago by rraadd_8 • 0 • written 8.5 years ago by tootiki • 0

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2.9k

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microarray limma multiple treatments lfc

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by brionyk9 • 0

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k