Showing : lfc • reset
0
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7
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2.2k
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LRT test followed by filtering based on LFC
deseq2 LFC LRT
written 6.9 years ago by • 0
1
vote
1
reply
1.3k
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM prior DESeq LFC
updated 3.6 years ago by 43k • written 3.6 years ago by • 0
0
votes
1
reply
1.8k
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Filtering DESeq2 results for | LFC | > 1 genes
RNAseq LFC DEseq
4.6 years ago ayy2110 • 0
0
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6
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2.5k
views
large range of LFC in DESeq2
deseq2 lfc betaprior
updated 3.2 years ago by 43k • written 7.1 years ago by • 0
17
votes
7
replies
16k
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DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2 lfc coef contrast
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 10
6
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4
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3.6k
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Identification of DEGs through limma analysis
limma microarray DEGs p values lfc
8.6 years ago rkp • 0
4
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14
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22k
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standard error value (lfcSE) returned by DeSeq2
deseq2 deseq lfc lfcse standard error
updated 8.8 years ago by • 0 • written 8.9 years ago by • 0
2
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1
reply
3.0k
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Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray limma multiple treatments lfc
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
8 results • Page 1 of 1
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Replies
Answer: Quality control of shotgun metagenomics data by James W. MacDonald 68k
This support site is meant primarily for helping people with technical questions about using Bioconductor packages. For general analysis qu…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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