Bioconductor Lfc

Showing : lfc • reset

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2.2k

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deseq2 LFC LRT

written 6.8 years ago by sally.badawi • 0

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1.3k

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GLM prior DESeq LFC

updated 3.5 years ago by Michael Love 43k • written 3.5 years ago by stew • 0

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1.7k

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RNAseq LFC DEseq

4.5 years ago ayy2110 • 0

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2.4k

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deseq2 lfc betaprior

updated 3.1 years ago by Michael Love 43k • written 7.0 years ago by Mariaxi • 0

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deseq2 lfc coef contrast

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by Anke Busch ▴ 10

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3.5k

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limma microarray DEGs p values lfc

8.4 years ago rkp • 0

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deseq2 deseq lfc lfcse standard error

updated 8.6 years ago by rraadd_8 • 0 • written 8.7 years ago by tootiki • 0

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3.0k

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microarray limma multiple treatments lfc

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Scholar to Gordon Smyth 53k