Bioconductor Lfc

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1.7k

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deseq2 LFC LRT

written 5.7 years ago by sally.badawi • 0

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960

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GLM prior DESeq LFC

updated 2.4 years ago by Michael Love 42k • written 2.4 years ago by stew • 0

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1.3k

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RNAseq LFC DEseq

3.4 years ago ayy2110 • 0

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1.8k

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deseq2 lfc betaprior

updated 2.0 years ago by Michael Love 42k • written 5.9 years ago by Mariaxi • 0

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14k

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deseq2 lfc coef contrast

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by Anke Busch ▴ 10

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3.0k

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limma microarray DEGs p values lfc

7.4 years ago rkp • 0

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19k

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deseq2 deseq lfc lfcse standard error

updated 7.6 years ago by rraadd_8 • 0 • written 7.7 years ago by tootiki • 0

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2.5k

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microarray limma multiple treatments lfc

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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