Bioconductor LiftOver

Showing : liftOver • reset

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761

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liftOver SNP GWASTools

22 months ago bonheur • 0

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2.1k

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lifto liftOver

updated 2.6 years ago by Marcel Ramos 700 • written 2.7 years ago by james.dalgleish • 0

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2.0k

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liftOver rtracklayer

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Mikhail Dozmorov ▴ 30

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1.8k

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liftOver

updated 4.1 years ago by shepherl 4.1k • written 4.1 years ago by bluepebbles • 0

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1.1k

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liftOver

4.2 years ago geneprophet • 0

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1.5k

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hg19 liftover matrixeqtl DMRcate

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by yoursbassanio ▴ 10

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1.5k

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rtracklayer export.bw liftover

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by ang ▴ 20

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1.4k

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rtracklayer liftOver parameters minMatch

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by Nik dAK ▴ 10

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3.3k

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rtracklayer liftover bioconductor R

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by m.guelfi • 0

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1.9k

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liftover rtracklayer

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by beausoleilmo • 0

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2.6k

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software error liftOver workflowinstall package installation

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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