Bioconductor LiftOver

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liftOver SNP GWASTools

2.0 years ago bonheur • 0

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2.2k

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lifto liftOver

updated 2.8 years ago by Marcel Ramos 700 • written 2.9 years ago by james.dalgleish • 0

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2.1k

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liftOver rtracklayer

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by Mikhail Dozmorov ▴ 30

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liftOver

updated 4.3 years ago by shepherl 4.1k • written 4.3 years ago by bluepebbles • 0

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liftOver

4.4 years ago geneprophet • 0

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hg19 liftover matrixeqtl DMRcate

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by yoursbassanio ▴ 10

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rtracklayer export.bw liftover

updated 6.3 years ago by Michael Lawrence ★ 11k • written 6.3 years ago by ang ▴ 20

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1.5k

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rtracklayer liftOver parameters minMatch

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by Nik dAK ▴ 10

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3.5k

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rtracklayer liftover bioconductor R

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by m.guelfi • 0

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liftover rtracklayer

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by beausoleilmo • 0

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software error liftOver workflowinstall package installation

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by JustGettinStarted • 0

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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