Bioconductor Log2fc

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1.2k

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fgsea log2FC

5 months ago V_Vibes • 0

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396

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DESeq2 log2FC vst()

updated 6 months ago by ATpoint ★ 4.6k • written 6 months ago by lifeonmars • 0

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860

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DESeq2 SingleCell log2FC

20 months ago paria.alipour • 0

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1.9k

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DESeq2 Log2FC RNASeqData

23 months ago Iwan • 0

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925

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by Laia ▴ 10

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5.6k

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DESeq2 log2FC

2.2 years ago User000 • 0

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1.7k

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log2FC DESeq2 GSEA voom limma

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Yang Shi ▴ 10

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2.9k

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edger log2FC

written 5.2 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.9 years ago by ellascottgm • 0 • written 6.9 years ago by Verena • 0

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1.5k

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deseq2 log2fc shrinkage

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by aec ▴ 90

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6.0k

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deseq2 L2FC log2fc

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by sup230 ▴ 30

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4.2k

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deseq2 log2fc

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by David R ▴ 90

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2.3k

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deseq2 chipseq counts log2fc error

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by robin.uchiyama • 0

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6.6k

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limma pvalue log2fc log2

updated 2.1 years ago by James W. MacDonald 67k • written 8.7 years ago by serpalma.v ▴ 60

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6.2k

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deseq2 differential gene expression log2fc

8.8 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by Sushant Pawar • 0

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2.1k

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scan Log2FC

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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