Bioconductor MakeContrasts

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designmatrices differentialexpression makeContrasts limma model.matrix

2.7 years ago mohammedtoufiq91 ▴ 10

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makeContrasts edgeR

updated 3.4 years ago by Steve Lianoglou ★ 13k • written 3.4 years ago by Lina ▴ 10

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microarray dge matrix makecontrasts limma

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by June. ▴ 10

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diffrential expression limma makeContrasts

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by S.Bamopoulos ▴ 10

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rnaseq edgeR makecontrasts interactions

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by David R ▴ 90

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limma model.matrix makecontrasts

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by enricoferrero ▴ 660

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858

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deseq2 makecontrasts

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by samuel.quentin • 0

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contrast matrix toptable makecontrasts differential gene expression

7.3 years ago • updated 7.2 years ago stinehedensted • 0

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limma contrast missing data lmfit makecontrasts

updated 7.3 years ago by Gordon Smyth 52k • written 7.4 years ago by wewolski ▴ 10

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limma toptable makecontrasts contrast matrix

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by hoe • 0

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rnaseq edger makecontrasts

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by wangzhang1988 • 0

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limma model.matrix makecontrasts

7.8 years ago TFony ▴ 10

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limma design matrix makecontrasts multiple comparisons

7.9 years ago annabelle.congras ▴ 10

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edger makecontrasts timecourse

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by aec ▴ 90

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edger makecontrasts

8.6 years ago xiaoaozqd • 0

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limma microarray interaction model multiple factor design makeContrasts

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by svlachavas ▴ 840

16 results • Page 1 of 1

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Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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Popular Question to rohitsatyam102 ▴ 20