Showing : makeContrasts • reset
9
votes
3
replies
5.0k
views
[limma] Define contrasts for model with covariates
limma model.matrix makecontrasts
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 660
3
votes
4
replies
4.9k
views
multiple comparison using limma
limma design matrix makecontrasts multiple comparisons
7.2 years ago annabelle.congras ▴ 10
8
votes
12
replies
4.2k
views
Interaction models in limma and multiple factor assessement regarding microarray statistical inference
limma microarray interaction model multiple factor design makeContrasts
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 830
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 6.6 years ago by 50k • written 6.7 years ago by ▴ 10
3
votes
6
replies
2.2k
views
Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
6.6 years ago stinehedensted • 0
2
votes
2
replies
1.9k
views
makeContrasts for comparing multiple levels of a factor variable to the reference level
diffrential expression limma makeContrasts
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 10
0
votes
4
replies
1.6k
views
setting contrast in edgeR for time series data
rnaseq edger makecontrasts
updated 6.9 years ago by ★ 28k • written 6.9 years ago by • 0
1
vote
6
replies
1.4k
views
edgeR time series DMSO correction
edger makecontrasts timecourse
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by ▴ 90
0
votes
7
replies
1.4k
views
why two different makeContrasts have the same results?
edger makecontrasts
7.9 years ago xiaoaozqd • 0
3
votes
4
replies
1.3k
views
How to make design matrices or compare contrast in limma
designmatrices differentialexpression makeContrasts limma model.matrix
2.0 years ago mohammedtoufiq91 ▴ 10
1
vote
2
replies
1.3k
views
differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 6.8 years ago by ★ 7.9k • written 6.8 years ago by • 0
2
votes
3
replies
1.2k
views
Issues about experiment design
limma model.matrix makecontrasts
7.2 years ago • updated 7.1 years ago TFony ▴ 10
1
vote
5
replies
1.1k
views
makeContrasts question
makeContrasts edgeR
updated 2.7 years ago by ★ 13k • written 2.7 years ago by ▴ 10
0
votes
2
replies
924
views
Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edgeR makecontrasts interactions
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 90
1
vote
2
replies
866
views
How to construct matrix and fit linear model for this microarray?
microarray dge matrix makecontrasts limma
updated 3.8 years ago by 50k • written 3.8 years ago by ▴ 10
0
votes
1
reply
730
views
DESeq2 : how to make model contrast with multifactors : cond1(env1 versus env2) versus cond2(env1 versus env2) ?
deseq2 makecontrasts
updated 6.4 years ago by 41k • written 6.4 years ago by • 0
16 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
WEHI, Melbourne, Australia, 12 minutes ago
United States, 23 minutes ago
Finland, 28 minutes ago
Finland, 1 hour ago
Spain, 1 hour ago
Traffic: 1024 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6