Showing : makeTxDbFromGFF • reset
0
votes
7
replies
1.9k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
updated 8.4 years ago by 16k • written 8.4 years ago by • 0
0
votes
3
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3.6k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures granges maketxdbfromgff
updated 6.7 years ago by 16k • written 6.8 years ago by • 0
8
votes
7
replies
3.5k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 10
2
votes
2
replies
830
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
14 months ago stacy.genovese • 0
0
votes
2
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2.0k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures makeTxDbFromGFF
updated 9.0 years ago by 16k • written 9.0 years ago by • 0
0
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2
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2.2k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf TxDb maketxdbfromgff
updated 8.8 years ago by 16k • written 8.9 years ago by • 0
4
votes
2
replies
1.3k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 8.0 years ago by ★ 6.8k • written 8.0 years ago by ▴ 80
3
votes
2
replies
2.2k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures gtf maketxdbfromgff iGenome
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 20
1
vote
2
replies
1.1k
views
Error while using GenomicFeatures package
genomicfeatures maketxdbfromgff
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures txdb maketxdbfromgff
updated 5.8 years ago by ▴ 50 • written 5.8 years ago by • 0
0
votes
2
replies
2.3k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff limma
updated 5.5 years ago by 16k • written 5.6 years ago by ▴ 20
3
votes
4
replies
2.6k
views
Saving and retrieving TxDB object
makeTxDBFromGFF EISA
updated 3.7 years ago by 65k • written 3.7 years ago by • 0
0
votes
4
replies
2.0k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 8.4 years ago by 16k • written 8.4 years ago by • 0
0
votes
5
replies
1.7k
views
makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
8.0 years ago TimothéeFlutre ▴ 80
1
vote
2
replies
1.4k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff genomicfeatures
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 80
0
votes
0
replies
1.2k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
8.4 years ago Karolin Wiedemann • 0
0
votes
0
replies
944
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
8.2 years ago Udi Landau ▴ 30
0
votes
7
replies
2.3k
views
makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
8.5 years ago José Luis Lavín ▴ 10
0
votes
1
reply
3.9k
views
create a txdb using makeTxDbFromGFF
bioconductor txdb maketxdbfromgff
6.4 years ago Nader.Aryamanesh • 0
0
votes
0
replies
890
views
Error using the makeTxDbFromGFF
maketxdbfromgff
6.2 years ago bright602 • 0
0
votes
1
reply
1.2k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
5.4 years ago csijcs • 0
0
votes
0
replies
1.5k
views
error with makeTxDbFromGFF
genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges
5.0 years ago xvazquezc • 0
22 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
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For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
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Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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