Showing : makecdfenv • reset
2
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570
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 14 months ago by 68k • written 14 months ago by • 0
0
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3
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2.2k
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unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
2
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8
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5.4k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
9.4 years ago jayme.rickman • 0
2
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4
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2.0k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 10
0
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4
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2.1k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 11.5 years ago by ★ 3.9k • written 11.5 years ago by 68k
0
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1
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2.1k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
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0
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2.2k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
12.0 years ago Isaac Neuhaus ▴ 360
0
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0
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1.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
12.0 years ago James W. MacDonald 68k
1
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4
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3.6k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
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3
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1.8k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.9 years ago by ★ 6.5k • written 12.9 years ago by ★ 13k
0
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2
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1.5k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 50
0
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2
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1.5k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 630
0
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0
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1.6k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
14.0 years ago Olivier Lucas ▴ 40
0
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0
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1.2k
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
14.3 years ago boczniak767 ▴ 740
0
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0
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1.4k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
16.1 years ago James W. MacDonald 68k
0
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1
reply
1.3k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 16.4 years ago by ★ 4.3k • written 16.4 years ago by ▴ 950
0
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2
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1.6k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 40
0
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2
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1.7k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.8 years ago by ★ 1.2k • written 16.8 years ago by ▴ 20
0
votes
2
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1.5k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 17.0 years ago by ★ 6.5k • written 17.0 years ago by ▴ 20
0
votes
2
replies
1.4k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 17.1 years ago by 68k • written 17.1 years ago by ▴ 60
0
votes
1
reply
1.7k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 17.1 years ago by ▴ 140 • written 17.1 years ago by 68k
0
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1
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1.1k
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 40
0
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5
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1.7k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.7 years ago by 21k • written 17.7 years ago by ★ 2.0k
0
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1
reply
1.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.3 years ago by ★ 1.2k • written 18.3 years ago by ★ 2.4k
0
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1
reply
1.1k
views
error in makecdfenv
makecdfenv makecdfenv
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 130
0
votes
2
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1.5k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 18.5 years ago by ▴ 50 • written 18.5 years ago by ▴ 290
0
votes
9
replies
2.5k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 90
0
votes
6
replies
1.6k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 1.3k
0
votes
3
replies
2.1k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
18.6 years ago Salim Charaniya ▴ 20
0
votes
4
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2.4k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.7 years ago by ★ 1.2k • written 18.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 60
0
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0
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1.1k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
19.1 years ago Charlyn Suarez ▴ 10
0
votes
4
replies
1.6k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 19.1 years ago by 25k • written 19.1 years ago by ★ 13k
0
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1
reply
1.5k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 19.2 years ago by 68k • written 19.2 years ago by ★ 2.2k
0
votes
5
replies
2.4k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.2 years ago by ▴ 20 • written 19.2 years ago by ★ 2.2k
0
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5
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2.1k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
19.4 years ago Wu, Xiwei ▴ 350
0
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1
reply
1.3k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 20
0
votes
2
replies
3.0k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 19.4 years ago by ▴ 120 • written 19.4 years ago by ▴ 340
0
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0
replies
1.0k
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
19.7 years ago Justin Borevitz ▴ 170
0
votes
1
reply
1.1k
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 20.2 years ago by ▴ 950 • written 20.2 years ago by ▴ 190
0
votes
0
replies
1.3k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
20.4 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
937
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 30
0
votes
1
reply
1.3k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 80
0
votes
3
replies
1.7k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 40
0
votes
0
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1.1k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
20.7 years ago Seth Falcon ★ 7.4k
0
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0
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1.1k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
20.7 years ago James W. MacDonald 68k
0
votes
1
reply
1.1k
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 140
0
votes
2
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1.4k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.7 years ago by ★ 5.5k • written 20.7 years ago by ▴ 110
0
votes
1
reply
1.4k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 10
68 results • Page 1 of 2
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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