Showing : makecdfenv • reset
2
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212
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 8 weeks ago by 67k • written 8 weeks ago by • 0
0
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3
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1.9k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.6 years ago by 67k • written 7.6 years ago by • 0
2
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8
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4.7k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.4 years ago jayme.rickman • 0
2
votes
4
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1.7k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.7 years ago by 67k • written 9.7 years ago by ▴ 10
0
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4
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1.8k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.5 years ago by ★ 3.9k • written 10.5 years ago by 67k
0
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1
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1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.8 years ago by 67k • written 10.8 years ago by ★ 13k
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0
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2.0k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
11.0 years ago Isaac Neuhaus ▴ 360
0
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0
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1.7k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
11.0 years ago James W. MacDonald 67k
1
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4
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3.2k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.0 years ago by 67k • written 11.0 years ago by ★ 13k
0
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3
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1.5k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by ★ 13k
0
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2
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1.3k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.0 years ago by 67k • written 12.0 years ago by ▴ 50
0
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2
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1.3k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.0 years ago by 67k • written 13.0 years ago by ▴ 630
0
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0
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1.4k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
13.0 years ago Olivier Lucas ▴ 40
0
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0
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1.0k
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
13.3 years ago boczniak767 ▴ 740
0
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0
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1.3k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.1 years ago James W. MacDonald 67k
0
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1
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1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 940
0
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2
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1.4k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.5 years ago by 67k • written 15.5 years ago by ▴ 40
0
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2
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1.4k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ▴ 20
0
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2
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1.3k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.0 years ago by ★ 6.5k • written 16.0 years ago by ▴ 20
0
votes
2
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1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.1 years ago by 67k • written 16.1 years ago by ▴ 60
0
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1
reply
1.4k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.1 years ago by ▴ 140 • written 16.1 years ago by 67k
0
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1
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957
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.4 years ago by 67k • written 16.4 years ago by ▴ 40
0
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5
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1.4k
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makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.7 years ago by 21k • written 16.7 years ago by ★ 2.0k
0
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1
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1.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ★ 2.4k
0
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1
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1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.4 years ago by 67k • written 17.4 years ago by ▴ 130
0
votes
2
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1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.5 years ago by ▴ 50 • written 17.5 years ago by ▴ 290
0
votes
9
replies
2.1k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 90
0
votes
6
replies
1.4k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.6 years ago by 67k • written 17.6 years ago by ★ 1.3k
0
votes
3
replies
1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.6 years ago Salim Charaniya ▴ 20
0
votes
4
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2.0k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 30
0
votes
1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 17.9 years ago by 21k • written 17.9 years ago by ▴ 60
0
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0
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983
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.1 years ago Charlyn Suarez ▴ 10
0
votes
4
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1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.1 years ago by 25k • written 18.1 years ago by ★ 13k
0
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1
reply
1.3k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.2 years ago by 67k • written 18.2 years ago by ★ 2.2k
0
votes
5
replies
2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.2 years ago by ▴ 20 • written 18.2 years ago by ★ 2.2k
0
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5
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1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.4 years ago Wu, Xiwei ▴ 350
0
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1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.4 years ago by 67k • written 18.4 years ago by ▴ 20
0
votes
2
replies
2.7k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.4 years ago by ▴ 120 • written 18.4 years ago by ▴ 340
0
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0
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877
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.7 years ago Justin Borevitz ▴ 170
0
votes
1
reply
972
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.7 years ago by 67k • written 18.7 years ago by ▴ 30
0
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1
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1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.2 years ago by ▴ 950 • written 19.2 years ago by ▴ 190
0
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0
replies
1.1k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
19.4 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
774
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 30
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.6 years ago by 67k • written 19.6 years ago by ▴ 80
0
votes
3
replies
1.5k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.7 years ago by 67k • written 19.7 years ago by ▴ 40
0
votes
0
replies
966
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.7 years ago Seth Falcon ★ 7.4k
0
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0
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985
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.7 years ago James W. MacDonald 67k
0
votes
1
reply
950
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 140
0
votes
2
replies
1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 110
0
votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.8 years ago by 67k • written 19.8 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
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