Showing : makecdfenv • reset
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gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 90
2
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8
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4.1k
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Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.6 years ago jayme.rickman • 0
0
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6
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1.1k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 1.3k
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5
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1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
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5
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1.5k
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Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
17.7 years ago Wu, Xiwei ▴ 350
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5
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1.1k
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makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.0 years ago by 21k • written 16.0 years ago by ★ 2.0k
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4
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1.6k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by 65k
1
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4
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2.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
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4
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1.2k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 17.4 years ago by 25k • written 17.4 years ago by ★ 13k
2
votes
4
replies
1.5k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.0 years ago by 65k • written 9.0 years ago by ▴ 10
0
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4
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1.7k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 30
0
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3
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1.7k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
0
votes
3
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1.1k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
19.7 years ago Mayte Suarez-Farinas ▴ 300
0
votes
3
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1.3k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 18.9 years ago by 65k • written 18.9 years ago by ▴ 40
0
votes
3
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1.7k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
16.9 years ago Salim Charaniya ▴ 20
0
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3
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1.3k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 11.2 years ago by ★ 6.5k • written 11.2 years ago by ★ 13k
0
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2
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990
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 10
0
votes
2
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1.1k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ▴ 20
0
votes
2
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1.3k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.1 years ago by ★ 1.2k • written 15.1 years ago by ▴ 20
0
votes
2
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1.0k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 15.4 years ago by 65k • written 15.4 years ago by ▴ 60
0
votes
2
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1.0k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 110
0
votes
2
replies
2.4k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 17.7 years ago by ▴ 120 • written 17.7 years ago by ▴ 340
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2
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1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
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votes
2
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1.1k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 11.3 years ago by 65k • written 11.3 years ago by ▴ 50
0
votes
2
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1.3k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 14.8 years ago by 65k • written 14.8 years ago by ▴ 40
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votes
2
replies
1.1k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 16.8 years ago by ▴ 50 • written 16.8 years ago by ▴ 290
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2
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979
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
19.2 years ago Margaret Gardiner-Garden ▴ 160
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2
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1.6k
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RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 20.3 years ago by ▴ 140 • written 20.3 years ago by ▴ 70
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1
reply
1.1k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 60
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votes
1
reply
1.0k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 65k • written 18.9 years ago by ▴ 80
0
votes
1
reply
776
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 19.7 years ago by ▴ 950 • written 19.7 years ago by ▴ 60
0
votes
1
reply
760
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.6 years ago by 65k • written 19.6 years ago by ▴ 510
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1
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1.1k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 10
0
votes
1
reply
832
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 140
0
votes
1
reply
732
views
makecdfenv
makecdfenv makecdfenv
updated 19.8 years ago by 65k • written 19.8 years ago by ▴ 80
0
votes
1
reply
662
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 30
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1
reply
850
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.0 years ago by 65k • written 18.0 years ago by ▴ 30
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votes
1
reply
713
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 10
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1
reply
1.1k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 20
0
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1
reply
1.2k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 17.5 years ago by 65k • written 17.5 years ago by ★ 2.2k
0
votes
1
reply
689
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 21.2 years ago by ▴ 640 • written 21.2 years ago by ▴ 20
0
votes
1
reply
864
views
error in makecdfenv
makecdfenv makecdfenv
updated 16.6 years ago by 65k • written 16.6 years ago by ▴ 130
0
votes
1
reply
977
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ★ 2.4k
0
votes
1
reply
816
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
0
votes
1
reply
1.0k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 940
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1
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1.6k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
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votes
1
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993
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 18.5 years ago by ▴ 950 • written 18.5 years ago by ▴ 190
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1
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1.1k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 19.8 years ago by ★ 1.1k • written 19.8 years ago by ▴ 10
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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