Showing : makecdfenv • reset
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gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 90
2
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8
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5.3k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
9.3 years ago jayme.rickman • 0
0
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6
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1.6k
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mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 18.5 years ago by 68k • written 18.5 years ago by ★ 1.3k
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5
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1.7k
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makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.6 years ago by 21k • written 17.6 years ago by ★ 2.0k
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5
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2.0k
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Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
19.4 years ago • updated 19.3 years ago Wu, Xiwei ▴ 350
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5
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2.3k
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Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.1 years ago by ▴ 20 • written 19.1 years ago by ★ 2.2k
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4
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2.3k
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affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.6 years ago by ★ 1.2k • written 18.6 years ago by ▴ 30
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4
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1.6k
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makecdfenv
cdf makecdfenv cdf makecdfenv
updated 19.0 years ago by 25k • written 19.0 years ago by ★ 13k
2
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4
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2.0k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 10
0
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4
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2.1k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by 68k
1
vote
4
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3.6k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
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3
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2.1k
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CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
18.5 years ago Salim Charaniya ▴ 20
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3
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1.7k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.8 years ago by ★ 6.5k • written 12.8 years ago by ★ 13k
0
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3
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2.3k
views
RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
written 21.9 years ago by ▴ 70
0
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3
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1.6k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
21.3 years ago Mayte Suarez-Farinas ▴ 300
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3
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2.2k
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unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
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3
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1.7k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 40
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2
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1.4k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.9 years ago by ★ 6.5k • written 16.9 years ago by ▴ 20
0
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2
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1.6k
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Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.7 years ago by ★ 1.2k • written 16.7 years ago by ▴ 20
0
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2
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1.5k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 630
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2
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1.2k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.9 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
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1.3k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 10
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2
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1.4k
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Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.6 years ago by ★ 5.5k • written 20.6 years ago by ▴ 110
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2
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2.9k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 19.3 years ago by ▴ 120 • written 19.3 years ago by ▴ 340
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2
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1.5k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 18.4 years ago by ▴ 50 • written 18.4 years ago by ▴ 290
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2
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1.3k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 60
0
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2
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1.6k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 40
0
votes
2
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1.4k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 50
0
votes
1
reply
1.3k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 80
0
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1
reply
922
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 30
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1
reply
1.0k
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 21.2 years ago by 68k • written 21.2 years ago by ▴ 510
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1
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1.4k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.8 years ago by 21k • written 18.8 years ago by ▴ 60
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1
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1.0k
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Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 21.3 years ago by ▴ 950 • written 21.3 years ago by ▴ 60
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1
reply
906
views
makecdfenv
makecdfenv makecdfenv
updated 21.4 years ago by 68k • written 21.4 years ago by ▴ 80
0
votes
1
reply
1.4k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 21.5 years ago by ★ 1.1k • written 21.5 years ago by ▴ 10
0
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1
reply
1.1k
views
error in makecdfenv
makecdfenv makecdfenv
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 130
0
votes
1
reply
1.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.2 years ago by ★ 1.2k • written 18.2 years ago by ★ 2.4k
0
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1
reply
917
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 10
0
votes
1
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1.1k
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.4 years ago by 68k • written 17.3 years ago by ▴ 40
0
votes
1
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1.6k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 17.0 years ago by ▴ 140 • written 17.0 years ago by 68k
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1
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1.3k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 20.1 years ago by ▴ 950 • written 20.1 years ago by ▴ 190
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1
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1.3k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 16.3 years ago by ★ 4.3k • written 16.3 years ago by ▴ 950
2
votes
1
reply
536
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
1
reply
928
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.9 years ago by ★ 5.5k • written 21.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
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1
reply
1.1k
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 140
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1
reply
1.1k
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 30
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1
reply
1.5k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.8 years ago by ▴ 640 • written 22.8 years ago by ▴ 20
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1
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1.3k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 20
68 results • Page 1 of 2
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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