Showing : makecdfenv • reset
0
votes
5
replies
1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.7 years ago Wu, Xiwei ▴ 350
0
votes
5
replies
2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.5 years ago by ▴ 20 • written 18.5 years ago by ★ 2.2k
2
votes
4
replies
1.8k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
0
votes
2
replies
1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.8 years ago by ▴ 50 • written 17.8 years ago by ▴ 290
0
votes
3
replies
2.0k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.9 years ago Salim Charaniya ▴ 20
0
votes
3
replies
1.4k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
20.7 years ago Mayte Suarez-Farinas ▴ 300
0
votes
4
replies
1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.4 years ago by 25k • written 18.4 years ago by ★ 13k
0
votes
2
replies
1.4k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 40
1
vote
4
replies
3.3k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
votes
4
replies
2.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.0 years ago by ★ 1.2k • written 18.0 years ago by ▴ 30
0
votes
1
reply
959
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 20.7 years ago by ▴ 950 • written 20.7 years ago by ▴ 60
0
votes
1
reply
917
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 510
0
votes
2
replies
1.1k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.2 years ago Margaret Gardiner-Garden ▴ 160
0
votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 110
0
votes
1
reply
994
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 140
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 80
0
votes
1
reply
814
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 30
2
votes
1
reply
358
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
3
replies
2.1k
views
RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 10 days ago by • 0 • written 21.3 years ago by ▴ 70
0
votes
3
replies
1.6k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.4 years ago by ▴ 950 • written 19.5 years ago by ▴ 190
0
votes
2
replies
1.5k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.1 years ago by ★ 1.2k • written 16.1 years ago by ▴ 20
0
votes
2
replies
1.4k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 630
0
votes
1
reply
1.4k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.2 years ago by ▴ 640 • written 22.2 years ago by ▴ 20
0
votes
1
reply
850
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 20
0
votes
1
reply
861
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.8 years ago by ★ 1.1k • written 20.8 years ago by ▴ 10
0
votes
1
reply
827
views
makecdfenv
makecdfenv makecdfenv
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 80
0
votes
1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 60
0
votes
6
replies
1.4k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.9 years ago by 68k • written 17.9 years ago by ★ 1.3k
0
votes
9
replies
2.2k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 90
0
votes
1
reply
1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 130
0
votes
1
reply
1.2k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ★ 2.4k
0
votes
5
replies
1.4k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.0 years ago by 21k • written 17.0 years ago by ★ 2.0k
0
votes
1
reply
996
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.4 years ago by ▴ 140 • written 16.4 years ago by 68k
0
votes
2
replies
1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 60
0
votes
2
replies
1.3k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.3 years ago by ★ 6.5k • written 16.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 950
0
votes
2
replies
1.3k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 50
0
votes
3
replies
1.6k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.2 years ago by ★ 6.5k • written 12.2 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 13k
0
votes
4
replies
1.9k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.8 years ago by ★ 3.9k • written 10.8 years ago by 68k
2
votes
8
replies
5.0k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.6 years ago jayme.rickman • 0
0
votes
3
replies
2.0k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
0
votes
1
reply
1.0k
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 30
0
votes
2
replies
2.8k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ▴ 340
0
votes
1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Locations • All
The city by the bay, 15 minutes ago
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform, 27 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
United States, 2 hours ago
Traffic: 764 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6