Showing : makecdfenv • reset
0
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Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.6 years ago Wu, Xiwei ▴ 350
0
votes
5
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2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ★ 2.2k
2
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4
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1.8k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 10
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2
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1.2k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
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2
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1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.7 years ago by ▴ 50 • written 17.7 years ago by ▴ 290
0
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3
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1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.8 years ago Salim Charaniya ▴ 20
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3
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1.4k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
20.6 years ago Mayte Suarez-Farinas ▴ 300
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4
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1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.3 years ago by 25k • written 18.3 years ago by ★ 13k
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2
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1.4k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 40
1
vote
4
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3.3k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
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4
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2.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 30
0
votes
1
reply
953
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 20.6 years ago by ▴ 950 • written 20.6 years ago by ▴ 60
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votes
1
reply
908
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 510
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2
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1.1k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.1 years ago Margaret Gardiner-Garden ▴ 160
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1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
0
votes
2
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1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.9 years ago by ★ 5.5k • written 19.9 years ago by ▴ 110
0
votes
1
reply
983
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 140
0
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1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 80
0
votes
1
reply
805
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 30
2
votes
1
reply
311
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 4 months ago by 68k • written 4 months ago by • 0
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2
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1.8k
views
RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 21.2 years ago by ▴ 140 • written 21.2 years ago by ▴ 70
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3
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1.5k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 40
0
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1
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1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.4 years ago by ▴ 950 • written 19.4 years ago by ▴ 190
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2
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1.5k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.0 years ago by ★ 1.2k • written 16.0 years ago by ▴ 20
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2
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1.4k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 630
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1
reply
1.4k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.1 years ago by ▴ 640 • written 22.1 years ago by ▴ 20
0
votes
1
reply
841
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 20
0
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1
reply
841
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 10
0
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1
reply
1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 10
0
votes
1
reply
824
views
makecdfenv
makecdfenv makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 80
0
votes
1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 60
0
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6
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1.4k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.8 years ago by 68k • written 17.8 years ago by ★ 1.3k
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9
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2.2k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 90
0
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1
reply
1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 130
0
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1
reply
1.2k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.5 years ago by ★ 1.2k • written 17.5 years ago by ★ 2.4k
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5
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1.4k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 21k • written 16.9 years ago by ★ 2.0k
0
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1
reply
990
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 40
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1
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1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.3 years ago by ▴ 140 • written 16.3 years ago by 68k
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2
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1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 60
0
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2
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1.3k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.2 years ago by ★ 6.5k • written 16.2 years ago by ▴ 20
0
votes
1
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1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 950
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2
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1.3k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 50
0
votes
3
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1.6k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.0 years ago by 68k • written 11.0 years ago by ★ 13k
0
votes
4
replies
1.9k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by 68k
2
votes
8
replies
4.9k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.6 years ago jayme.rickman • 0
0
votes
3
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2.0k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
0
votes
1
reply
994
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 30
0
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2
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2.8k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by ▴ 120 • written 18.6 years ago by ▴ 340
0
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1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 20
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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
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Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
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